YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.08
Organism:	Schizosaccharomyces pombe
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.08.

Description	E-value	Query Range	Subject Range
gi\|159130472 - gi\|159130472\|gb\|EDP55585.1\| AAA family ATPase Rvb2/Reptin, putative [Aspergillus fumigatus A1163] RUVB2_ASPFU - RuvB-like helicase 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100... RUVB2_ASPFU - RuvB-like helicase 2 OS=Aspergillus fumigatus GN=rvb2 PE=3 SV=1	236.0	[0..1]	[461..1]
gi\|207340744 - gi\|207340744\|gb\|EDZ68998.1\| YPL235Wp-like protein [Saccharomyces cerevisiae AWRI1631] RUVB2_YEAST - RuvB-like protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RVB2 PE=1 SV=1 RVB2 - Essential protein involved in transcription regulation; component of chromatin remodeling complexes;... gi\|190407729 - gi\|190407729\|gb\|EDV10994.1\| transcriptional regulator [Saccharomyces cerevisiae RM11-1a] gi\|151942566 - gi\|151942566\|gb\|EDN60912.1\| transcriptional regulator [Saccharomyces cerevisiae YJM789]	234.0	[0..1]	[464..1]
gi\|114193596, gi... - gi\|115396776\|ref\|XP_001214027.1\| hypothetical protein ATEG_04849 [Aspergillus terreus NIH2624], gi\|1...	232.0	[0..5]	[461..8]
gi\|60652923 - gi\|60652923\|gb\|AAX29156.1\| RuvB-like 2 [synthetic construct]	232.0	[0..2]	[459..7]
RUVB2_CANGA - RuvB-like helicase 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y... RUVB2_CANGA - RuvB-like helicase 2 OS=Candida glabrata GN=RVB2 PE=3 SV=1	231.0	[0..1]	[464..1]
gi\|110763884 - gi\|110763884\|ref\|XP_001122537.1\| PREDICTED: similar to RuvB-like 2 (p47 protein) [Apis mellifera]	231.0	[0..4]	[445..8]
RUVBL2 - RuvB-like 2 (E. coli) ENSMMUG000000039... - null, null gi\|208967366, gi... - gi\|208967366\|dbj\|BAG73697.1\| RuvB-like 2 [synthetic construct], gi\|123995785\|gb\|ABM85494.1\| RuvB-lik... gi\|114678319 - gi\|114678319\|ref\|XP_001172052.1\| PREDICTED: RuvB-like 2 isoform 4 [Pan troglodytes]	231.0	[0..2]	[450..7]
gi\|70794778, gi\|... - gi\|70794778\|ref\|NP_001020576.1\| RuvB-like 2 [Rattus norvegicus], gi\|67678298\|gb\|AAH98042.1\| RuvB-lik...	230.0	[0..2]	[450..7]
gi\|119910878 - gi\|119910878\|ref\|XP_001253359.1\| PREDICTED: similar to RuvB-like 2 (48 kDa TATA box-binding protein-... gi\|73948016 - gi\|73948016\|ref\|XP_533625.2\| PREDICTED: similar to RuvB-like 2 (48-kDa TATA box-binding protein-inte...	230.0	[0..2]	[450..7]
gi\|34856079, gi\|... - ref\|XP_214951.2\| similar to DNA helicase [Rattus norvegicus], gi\|149055923\|gb\|EDM07354.1\| RuvB-like... RUVB2_MOUSE - RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=1 SV=3 gi\|149757860 - gi\|149757860\|ref\|XP_001490235.1\| PREDICTED: similar to DNA helicase isoform 1 [Equus caballus]	230.0	[0..2]	[450..7]

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Predicted Domain #1

Region A:
Residues: [1-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISVTSHND VSKLERIGAH SHIKGIGLND NLEPKESSQG MVGQVKARRA AGVILKMIQE  60
   61 GRIAGRAILM AGPPSTGKTA IAMGMAQSLG SDTPFVTLSA SEVYSLEMSK TEALLQALRK 120
  121 SIGVRIKEET EIIEGEVVEV QIDRSITGGN KQGKLTIRST DMETVYDLGT KMIDSLTKEK 180
  181 VLAGDVISID KSVGRVTKLG RSFSRARDYD AMGADTRFVQ CPQGEIQKRK EVVHTVSLHD 240
  241 IDVINSRTQG FLALFSGDTG EIKPEVREQI NTKVSEWREE GKAEIVPGVL FVDEVHMLDI 300
  301 ECFSFFNRAL EDDLAPIVIM ASNRGITRIR GTNYRSPHGI PVDLLDRMLI ISTLPYSHEE 360
  361 VKEILKIRCQ EEDVDMEPSA LDYLSTIGQE TSLRYALLLI SSSNQVALKR KSATIEESDI 420
  421 RRVYELFLDQ KRSVEYLEEY GKNYITENEW SASGAQDNAV AMQED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.30103
Match:	2c9oA
Description:	No description for 2c9oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits