YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC13F5.03c
Organism:	Schizosaccharomyces pombe
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC13F5.03c.

Description	E-value	Query Range	Subject Range
gi\|110802422, gi... - gi\|110802422\|ref\|YP_699787.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfr...	379.0	[0..30]	[449..423]
gi\|169298566, gi... - gi\|169343268\|ref\|ZP_02864279.1\| aldehyde-alcohol dehydrogenase [Clostridium perfringens C str. JGS14... gi\|18311513, gi\|... - gi\|18311513\|ref\|NP_563447.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfri... gi\|182380321, gi... - gi\|182380321\|gb\|EDT77800.1\| aldehyde-alcohol dehydrogenase [Clostridium perfringens NCTC 8239], gi\|1... gi\|170715023, gi... - gi\|170715023\|gb\|EDT27205.1\| aldehyde-alcohol dehydrogenase [Clostridium perfringens CPE str. F4969],... gi\|170712167, gi... - gi\|170712167\|gb\|EDT24349.1\| aldehyde-alcohol dehydrogenase [Clostridium perfringens B str. ATCC 3626... gi\|170662702, gi... - gi\|170662702\|gb\|EDT15385.1\| aldehyde-alcohol dehydrogenase [Clostridium perfringens E str. JGS1987],...	376.0	[0..30]	[449..423]
gi\|110673221, gi... - gi\|110798574\|ref\|YP_697219.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfr...	375.0	[0..30]	[449..423]
gi\|28211045, gi\|... - gi\|28211045\|ref\|NP_781989.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium tetani...	372.0	[0..30]	[449..423]
gi\|65321739, gi\|... - gi\|65321739\|ref\|ZP_00394698.1\| COG1454: Alcohol dehydrogenase, class IV [Bacillus anthracis str. A20...	364.0	[0..30]	[449..303]
gi\|47505044, gi\|... - gi\|47529896\|ref\|YP_021245.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthracis... gi\|30259099, gi\|... - gi\|30264441\|ref\|NP_846818.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthracis... gi\|190566856, gi... - gi\|190566856\|ref\|ZP_03019772.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis Tsiankovskii-I], ... gi\|170707416, gi... - gi\|170707416\|ref\|ZP_02897870.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0389], gi\|1... gi\|170687429, gi... - gi\|170687429\|ref\|ZP_02878646.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0465], gi\|1... gi\|167638534, gi... - gi\|167638534\|ref\|ZP_02396810.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0193], gi\|1... gi\|229604754, gi... - gi\|229604754\|ref\|YP_002868660.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0248], gi\|... gi\|167529979, gi... - gi\|167634527\|ref\|ZP_02392847.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0442], gi\|1... gi\|227006524, gi... - gi\|227817150\|ref\|YP_002817159.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. CDC 684], g... gi\|165872736, gi... - gi\|165872736\|ref\|ZP_02217364.1\| aldehyde-alcohol dehydrogenase [Bacillus anthracis str. A0488], gi\|1... gi\|254741512 - gi\|254741512\|ref\|ZP_05199199.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthra... gi\|254736474 - gi\|254736474\|ref\|ZP_05194180.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthra... gi\|254721959 - gi\|254721959\|ref\|ZP_05183748.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthra... gi\|254684127 - gi\|254684127\|ref\|ZP_05147987.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthra... gi\|254750950 - gi\|254750950\|ref\|ZP_05202989.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthra... gi\|49187263, gi\|... - gi\|49187263\|ref\|YP_030515.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus anthracis...	364.0	[0..30]	[449..432]
gi\|51974605, gi\|... - gi\|52141136\|ref\|YP_085694.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus cereus E3...	363.0	[0..30]	[449..432]
gi\|30022446, gi\|... - gi\|30022446\|ref\|NP_834077.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus cereus AT... gi\|228653768, gi... - gi\|229129651\|ref\|ZP_04258619.1\| Alcohol dehydrogenase, iron-containing [Bacillus cereus BDRD-Cer4], ...	361.0	[0..30]	[449..432]
gi\|42739428, gi\|... - gi\|42783499\|ref\|NP_980746.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus cereus AT...	361.0	[0..30]	[449..432]
gi\|49476825, gi\|... - gi\|49476825\|ref\|YP_038422.1\| bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Bacillus thuringie...	360.0	[0..30]	[449..432]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGPRLCAAT PRFPLVSLAH RNSKVFALAS SNAVAQRWGK RFYAPIETET PHKVGVEFEE  60
   61 SKDRIFTSPQ KYVQGRHAFT RSYMYVKKWA TKSAVVLADQ NVWNICANKI VDSLSQNGMT 120
  121 VTKLVFGGEA SLVELDKLRK QCPDDTQVII GVGGGKTMDS AKYIAHSMNL PSIICPTTAS 180
  181 SDAATSSLSV IYTPDGQFQK YSFYPLNPNL IFIDTDVIVR APVRFLISGI GDALSTWVET 240
  241 ESVIRSNSTS FAGGVASIAG RYIARACKDT LEKYALSAIL SNTRGVCTEA FENVVEANTL 300
  301 MSGLGFENGG LAAAHAIHNG MTAIHGPVHR LMHGEKVAYG TLVQVVLEDW PLEDFNNLAS 360
  361 FMAKCHLPIT LEELGIPNVT DEELLMVGRA TLRPDESIHN MSKKFNPSQI ADAIKAVDSY 420
  421 SQKWQEQTGW TERFRLPPSR HSPHLTDIHP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1ta9A
Description:	Crystal structure of glycerol dehydrogenase from Schizosaccharomyces pombe
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits