YRC Public Data Repository - Protein Structure Prediction

Protein:	bub3
Organism:	Schizosaccharomyces pombe
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bub3.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	329.0	[0..2]	[318..1204]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	328.0	[0..3]	[320..1149]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	323.0	[0..2]	[320..811]
gi\|75908842, gi\|... - gi\|75908842\|ref\|YP_323138.1\| Fis family transcriptional regulator [Anabaena variabilis ATCC 29413], ...	316.0	[0..2]	[318..758]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	314.0	[0..2]	[318..957]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFSKTLLKN SKDGISSVIF SPSVKNELIA GCWDGSLLHY QISENPELLG KYDLSSPILS  60
   61 LEYTDEKTAL VGNLDGTVTT LDLNTRNHEF LGNHGKGVSC ISKLRLENCF ISGSWDKSFR 120
  121 VWDVRVKQPV EGQDIGKKIF ASSSRDNILV LGCSERENLV YDIRNLKLPF QRRPSSFKYM 180
  181 TRSVCCNQNF EGFVSSSIEG RTSVEYINPS QEAQSKNFTF KCHRQIQKDY DIVYPVNDLK 240
  241 FHPIHQTLAT AGGDGVVAFW DIQVRKRLRV LNPSKINISS ISFNVDGSML AIATCAQEEA 300
  301 AGNIYVHALE SNFAAPKLKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits