YRC Public Data Repository - Protein Structure Prediction

Protein:	mcp5
Organism:	Schizosaccharomyces pombe
Length:	968 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mcp5.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	359.0	[0..1]	[680..2065]
gi\|39970989, gi\|... - gi\|39970989\|ref\|XP_366885.1\| hypothetical protein MG02961.4 [Magnaporthe grisea 70-15], gb\|EAA47718....	345.0	[0..712]	[960..304]
gi\|42548130, gi\|... - gi\|46130600\|ref\|XP_389080.1\| hypothetical protein FG08904.1 [Gibberella zeae PH-1], gi\|42548130\|gb\|E...	315.0	[0..709]	[963..1445]
gi\|8250512 - gi\|8250512\|emb\|CAB93660.1\| AMI1 protein [Podospora anserina]	285.0	[0..711]	[963..1486]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	284.0	[0..1]	[680..1012]
gi\|67539318, gi\|... - gi\|67539318\|ref\|XP_663433.1\| hypothetical protein AN5829.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	281.0	[0..712]	[961..769]
gi\|32417330, gi\|... - gi\|32417330\|ref\|XP_329143.1\| hypothetical protein [Neurospora crassa], gi\|28926010\|gb\|EAA35001.1\| hy... gi\|85112061 - gi\|85112061\|ref\|XP_964237.1\| hypothetical protein [Neurospora crassa OR74A]	271.0	[0..712]	[961..1547]
APSA_EMENI - Anucleate primary sterigmata protein A - Emericella nidulans (Aspergillus nidulans)	261.0	[0..710]	[960..1254]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKQDNEVE LYSIDLKNRN ESAKIKLAYA KALEESILCE TRKIEQEIKD QVVQKENKTY  60
   61 FNNKFDNRYK LRDLEKNLAE EEVRITEMLT IQRQDIAIER RKNTNCFSES SQVDQYSVTE 120
  121 TNLQYATNIG LNLLQQLRYL RLQLSEKEDL HKKLSVDNAH LIKQLDLLSS NMKTLMKEKT 180
  181 KVQGQRDLLE QRLQGLMKKL TEVESLTVSL NDEKNKLTLE LTNLRICLHE LQLNAEKGET 240
  241 IDESEDSKNT LVTEDENDDS VFLESSSDKY FDSSSFDAEQ EEKHDFPIDP FLSLESNVQT 300
  301 SVSQSSAVLK SINLAKQELV SVNHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [326-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VADDTKTPSP NLSSEIIENT KADIKKSIRS LNKAVSPENS IDIEDETDRD DEFICFLLSY  60
   61 QQLQKALKSN LGLFQLSCLY PLSLNHLIQS FFQSLTSQIS IKDIDSKNKQ VIKLFKPTKS 120
  121 SDRQEIFELA QFEPRQKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [464-710]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIDTNSSKCD MSASTEMHLK DTEKFANFKL KENILNHSSI YERDVSYLPA LNKGGRENYL  60
   61 NNRVSSYRLV KPILNSYGNH VLNRIQHDIL ENHFCCLKNV KDFVCGANTI SMQWNLQKNM 120
  121 EFISSVFSLI KNEVNDTSAN SVILRTDALS NVATTRLKRK LTSAIIDCSI PRRRLRHYSN 180
  181 PEIAEFKNFR LSTDISHSNV RNSKKLCSNG SMNCMRQGKA VFPRKIPYQE HDWEQWEKIA 240
  241 QSSMFKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [711-785]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSIASRQSLE TSDVTLDINM SSRHSNGTSS MLFKDFTKHN NWEASTYPSA PKNTRTYPTA  60
   61 EVEKTRHDSS QSARQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.359	a.74.1	Cyclin-like
View	Download	0.254	d.58.3	Protease propeptides/inhibitors

Predicted Domain #5

Region A:
Residues: [786-968]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKARSTATTI SISLSTVSDV FTLPRNNLKS KTNTKKCRDN LNLSGLSSST CNANSVNKLM  60
   61 KHVMMGNEMM KYPRSESFKM FKKSHWRYFW INPHCEMLCW SKTNPFIEKG RKNQVKSVKI 120
  121 KGMTIIKAPD ALKNANLHNE VIVMQTTDKP IVLKAKSKKI HNIWVQAIKQ INHKAIFDTK 180
  181 PGI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits