| Protein: | clr1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1238 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clr1.
| Description | E-value | Query Range |
Subject Range |
|
|
249.0 | [0..108] | [973..245] |
|
|
247.0 | [0..108] | [973..720] |
|
|
246.0 | [0..108] | [973..719] |
|
|
202.0 | [0..100] | [988..4264] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MAEPDISSSE TLTELQQLRL LYFFCFYHAA PFNVKTLVHS LIPPGALSYL LSTYDILRPW 60
61 LMALRVREGP VNDISTIVQL YEEIVKTGFF INPPPFESYS QTLVARITTL G
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [112-192] |
1 11 21 31 41 51
| | | | | |
1 RPKLQVQQEA QSEVYQRAST NTQQQVSNVS HGNFKPNSSV NTEPNTSILS NSKYAGIKPF 60
61 DFQSSSQNPG LVCEQKTFYQ H
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [193-293] |
1 11 21 31 41 51
| | | | | |
1 QFRPFSNLPS NKSSPVKHVS PNVKNNSKKT ASSVNSNHSS IPSSITKSNI SSLDVYGSEK 60
61 LISSGSQQPG HGMVQTTSDK VNASASLYDR SPSKKDITSS R
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.262 | 0.039 | chromatin silencing at silent mating-type cassette | a.1.1 | Globin-like |
| View | Download | 0.650 | 0.039 | chromatin silencing at silent mating-type cassette | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.270 | 0.039 | chromatin silencing at silent mating-type cassette | a.43.1 | Met repressor-like |
| View | Download | 0.849 | 0.039 | chromatin silencing at silent mating-type cassette | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.363 | 0.039 | chromatin silencing at silent mating-type cassette | a.36.1 | Signal peptide-binding domain |
|
Region A: Residues: [294-352] |
1 11 21 31 41 51
| | | | | |
1 NTSSYNLGSM RNPSTLKNAA HANPFEGLRF QGSSAVLKEG LNSTVKKTFF DNLNSEKVC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.359 | a.77.1 | DEATH domain |
| View | Download | 0.269 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.252 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.328 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.299 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
|
Region A: Residues: [353-595] |
1 11 21 31 41 51
| | | | | |
1 PSVSPFLTPD NIASSILYST ASFSRSKPDR PRLNLSLELK LMQNELNKGQ LKKQFKGDLR 60
61 NLADWNNLSL VSSKFPSLPI TNLRPDGSFL KHRRFNEEIA YNRQTLEKAI KQLDLSPDKV 120
121 IQLREQNGVA VNGRVCYPTR NKHSEISAQS SSSLGVTKSL ASEVYSSSTV DTISKLNTDK 180
181 DNYLIKSKKE PIQQKSVSSE TTLVKPSSTS SYIDTTNNVL KTNSSFKSSG LTSGPRNEKE 240
241 LLP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [596-701] |
1 11 21 31 41 51
| | | | | |
1 EGIPTSHNNS ETQAQTADVS NIAASADGIY NSDQEKPPEK LDVTKRAFGR EIENSNEKEL 60
61 LTSTFLSPSA ESQVCLAEIK TIRPGLVPKK QFSVDQNNVI SDNTDC
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 1v65A |
| Description: | Solution structure of the Kruppel-associated box (KRAB) domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.35084112049258 | bayes_pls_golite062009 |
| DNA binding | 2.22582111349682 | bayes_pls_golite062009 |
| binding | 2.0499154380126 | bayes_pls_golite062009 |
| protein binding | 0.477323490762673 | bayes_pls_golite062009 |
|
Region A: Residues: [702-933] |
1 11 21 31 41 51
| | | | | |
1 SLPKPSNSKL SSISSDGDAS SNRMAVPDKS PFVHAAPNSK ALTKDSFSTH ISVSSLLHSD 60
61 NEISPIDSTR KDYFTSKDSN LQTLKEDASS TKQAKDSGTN DFDKLISGND VSKNNSGEEQ 120
121 SRSALKPLIS GKLSSCESIN LTKDISTVKR KEYFGIESTS SKQPFHDTGS IKIPAKRSFD 180
181 TIDKDFRSSN IPFADKIKED GGDKNVISSI HITTELPKSM PVEVPTNAGA QS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [934-1238] |
1 11 21 31 41 51
| | | | | |
1 DQSNVVDSES LNLRENISTS VADVSLSQAG NEAVLSKKAC KPLVLIDPFE EKVLKAFNML 60
61 SKGYAEYRCQ WEGCLANLHS LENFIKHVLL LHHPKSCSVV KCLWASCDMV LPSEEFEMHL 120
121 RGHLNNIRLN CEVSNCKKCF SNYEDMFKHL QHSHLPFKFT PESFIKIRNG NVKEEARRTR 180
181 NAYTQKSGEV ECFMETCTPI AKPAPANWYP VPPPGFNSSL LSRLTQSNQS KDKIIAALAK 240
241 RNVYKSFAGL YDSKGKNDNT GYDFDSNYAR VGRHGSFILP VSKSVPTPSL LIEGSIVQRK 300
301 NIKIE
|
| Detection Method: | |
| Confidence: | 1.46 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
