YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.03
Organism:	Schizosaccharomyces pombe
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.03.

Description	E-value	Query Range	Subject Range
gi\|28926963, gi\|... - gi\|38567038\|emb\|CAE76336.1\| conserved hypothetical protein [Neurospora crassa], gi\|32409331\|ref\|XP_3... gi\|85117010 - gi\|85117010\|ref\|XP_965159.1\| hypothetical protein NCU00966 [Neurospora crassa OR74A]	364.0	[0..1]	[255..6]
gi\|39941964, gi\|... - gi\|39941964\|ref\|XP_360519.1\| hypothetical protein MGG_10831 [Magnaporthe grisea 70-15], gb\|EAA47020....	354.0	[0..1]	[256..7]
gi\|71017831, gi\|... - gi\|71017831\|ref\|XP_759146.1\| hypothetical protein UM02999.1 [Ustilago maydis 521], ref\|XP_400614.1\| ...	351.0	[0..2]	[258..5]
EMC3_DANRE - ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1	350.0	[0..3]	[256..5]
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	350.0	[0..3]	[256..5]
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	350.0	[0..3]	[256..5]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	349.0	[0..3]	[256..5]
gi\|47229601 - gi\|47229601\|emb\|CAG06797.1\| unnamed protein product [Tetraodon nigroviridis]	349.0	[0..3]	[256..5]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLLLDPAL RNWVLLPIMF VMILIGILRH NATILLQSSP KKLSKEEIRE QRLLQRAYAL  60
   61 RACSNSLLPE SIEARKCFLI ESLKSGKYLK PVDPNAPKAA NPLMDDKTLE GLMESMKGNM 120
  121 LMVVPQTIIM TWINEFFSGF ILLKLPFPLT LRFKSIFQSG VATQDLDVQW VSSISWYFLN 180
  181 LFGLKSVYAL LLGE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNAASNATNE MGMAGFSSAA ATAQLIQPGQ DISKMMLSEA ENVQILKNES LLVDVEKRLL  60
   61 AQFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.60.1	SAM/Pointed domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits