YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.03
Organism:	Schizosaccharomyces pombe
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.03.

Description	E-value	Query Range	Subject Range
gi\|28926963, gi\|... - gi\|38567038\|emb\|CAE76336.1\| conserved hypothetical protein [Neurospora crassa], gi\|32409331\|ref\|XP_3... gi\|85117010 - gi\|85117010\|ref\|XP_965159.1\| hypothetical protein NCU00966 [Neurospora crassa OR74A]	364.0	[0..1]	[255..6]
gi\|39941964, gi\|... - gi\|39941964\|ref\|XP_360519.1\| hypothetical protein MGG_10831 [Magnaporthe grisea 70-15], gb\|EAA47020....	354.0	[0..1]	[256..7]
gi\|71017831, gi\|... - gi\|71017831\|ref\|XP_759146.1\| hypothetical protein UM02999.1 [Ustilago maydis 521], ref\|XP_400614.1\| ...	351.0	[0..2]	[258..5]
EMC3_DANRE - ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1	350.0	[0..3]	[256..5]
EMC3_RAT - ER membrane protein complex subunit 3 OS=Rattus norvegicus GN=Emc3 PE=2 SV=3 EMC3_MOUSE - ER membrane protein complex subunit 3 OS=Mus musculus GN=Emc3 PE=1 SV=3	350.0	[0..3]	[256..5]
ENSCJAT00000031683 - null gi\|55619789 - gi\|55619789\|ref\|XP_516272.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] TM111_PONPY - Transmembrane protein 111 - Pongo pygmaeus (Orangutan) tr\|M3WUY6\|M3WUY6... - ER membrane protein complex subunit 3 OS=Felis catus GN=EMC3 PE=3 SV=1 gi\|149728297 - gi\|149728297\|ref\|XP_001494113.1\| PREDICTED: similar to Transmembrane protein 111 [Equus caballus] EMC3_PONAB - ER membrane protein complex subunit 3 OS=Pongo abelii GN=EMC3 PE=2 SV=3 TMEM111 - transmembrane protein 111 gi\|57100904 - gi\|57100904\|ref\|XP_533744.1\| PREDICTED: similar to 30 kDa protein isoform 1 [Canis familiaris]	350.0	[0..3]	[256..5]
EMC3_BOVIN - ER membrane protein complex subunit 3 OS=Bos taurus GN=EMC3 PE=2 SV=3	349.0	[0..3]	[256..5]
gi\|47229601 - gi\|47229601\|emb\|CAG06797.1\| unnamed protein product [Tetraodon nigroviridis]	349.0	[0..3]	[256..5]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLLLDPAL RNWVLLPIMF VMILIGILRH NATILLQSSP KKLSKEEIRE QRLLQRAYAL  60
   61 RACSNSLLPE SIEARKCFLI ESLKSGKYLK PVDPNAPKAA NPLMDDKTLE GLMESMKGNM 120
  121 LMVVPQTIIM TWINEFFSGF ILLKLPFPLT LRFKSIFQSG VATQDLDVQW VSSISWYFLN 180
  181 LFGLKSVYAL LLGE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNAASNATNE MGMAGFSSAA ATAQLIQPGQ DISKMMLSEA ENVQILKNES LLVDVEKRLL  60
   61 AQFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.804	N/A	N/A	a.60.1	SAM/Pointed domain
View	Download	0.482	N/A	N/A	a.29.8	Description not found.
View	Download	0.480	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.477	N/A	N/A	a.159.2	FF domain
View	Download	0.448	N/A	N/A	d.48.1	RecA protein, C-terminal domain
View	Download	0.393	N/A	N/A	a.60.1	SAM/Pointed domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits