YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC594.06c
Organism:	Schizosaccharomyces pombe
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC594.06c.

Description	E-value	Query Range	Subject Range
gi\|145022077, gi... - gi\|39941032\|ref\|XP_360053.1\| hypothetical protein MGG_05428 [Magnaporthe grisea 70-15], gb\|EAA54636....	157.0	[0..3]	[341..5]
gi\|109507346 - gi\|109507346\|ref\|XP_001057944.1\| PREDICTED: similar to sorting nexin 2 [Rattus norvegicus]	154.0	[0..3]	[339..142]
gi\|114601330, gi... - gi\|114601336\|ref\|XP_001154100.1\| PREDICTED: sorting nexin 2 isoform 8 [Pan troglodytes], gi\|11460133...	153.0	[0..3]	[339..142]
gi\|33304626 - gi\|33304626\|gb\|AAQ02693.1\| transformation-related 9 [Homo sapiens]	153.0	[0..3]	[339..142]
gi\|109078354 - gi\|109078354\|ref\|XP_001092244.1\| PREDICTED: similar to sorting nexin 2 isoform 5 [Macaca mulatta]	152.0	[0..3]	[339..142]
gi\|74152064 - gi\|74152064\|dbj\|BAE32065.1\| unnamed protein product [Mus musculus]	152.0	[0..3]	[339..142]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKIKIPET SQSSDEYSRW TVYHIEVAFP NGGKHVVFRR FNEFVALDAQ IRPNDYNSRL  60
   61 CKLPSKSWVS STVTNEKLRE SRRLALQAYV QCLSETPWIK MPVVKKFLNI KDESEDETQG 120
  121 QFLGPTDWIQ VFQDCKRNLH MYRVDLMSGK SITIGVQTKN VYAIKSLMDN LSESLDKLEL 180
  181 ANALGPGEIL RRKDMLEQLG SEFLSFKRLV KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	2dybA
Description:	No description for 2dybA was found.

Predicted Domain #2

Region A:
Residues: [213-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANSPVAPPSA SSQLNSSNPS SPFRPLSAST DKQSNTSLNR VLGKNRMPET QTTKKLDNVG  60
   61 LYNMQNQTME DQDMQAESLL PIIQRQKELS KMINQEVVEQ NSMLDELSNE AYANQKKLHR 120
  121 TRAGLRKLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1dn1B
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits