YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC589.10c
Organism:	Schizosaccharomyces pombe
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC589.10c.

Description	E-value	Query Range	Subject Range
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	210.0	[0..1]	[149..80]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	205.0	[0..1]	[149..73]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	203.0	[0..1]	[149..26]
gi\|29612581 - gi\|29612581\|gb\|AAH49478.1\| Zgc:66168 protein [Danio rerio]	199.0	[0..1]	[149..17]
gi\|600539 - gi\|600539\|gb\|AAA57047.1\| ubiquitin [synthetic construct]	197.0	[0..1]	[149..1]
gi\|300676798\|gb\|... - ribosomal protein S27a [Zonotrichia albicollis], ribosomal protein S27a [Zonotrichia albicollis] RS27A_CHICK - Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3 gi\|224047492 - gi\|224047492\|ref\|XP_002199635.1\| PREDICTED: similar to ribosomal protein S27a [Taeniopygia guttata]	197.0	[0..1]	[149..1]
RS27A_CAVPO - Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2 gi\|148222699, gi... - gi\|49257574\|gb\|AAH74147.1\| MGC81889 protein [Xenopus laevis], gi\|148222699\|ref\|NP_001086065.1\| MGC81... gi\|189055074, gi... - gi\|70656\|pir\|\|UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human, gi\|4506713\|r... RS27A_BOVIN - Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2 gi\|55595793 - gi\|55595793\|ref\|XP_515482.1\| PREDICTED: hypothetical protein XP_515482 [Pan troglodytes] gi\|149727572 - gi\|149727572\|ref\|XP_001496841.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a [Equus c... gi\|126303852 - gi\|126303852\|ref\|XP_001375230.1\| PREDICTED: similar to ubiquitin [Monodelphis domestica] gi\|149640802, gi... - gi\|149640802\|ref\|XP_001509244.1\| PREDICTED: similar to ubiquitin isoform 1 [Ornithorhynchus anatinus... tr\|M3WWF6\|M3WWF6... - Ribosomal protein S27a OS=Felis catus GN=RPS27A PE=4 SV=1 ENSOCUP000000031... - pep:known scaffold:oryCun2:AAGW02082242:9564:11919:1 gene:ENSOCUG00000003613 transcript:ENSOCUT00000... CCDS33202.1_1 - null gi\|67970806 - gi\|67970806\|dbj\|BAE01745.1\| unnamed protein product [Macaca fascicularis] gi\|109103033 - gi\|109103033\|ref\|XP_001112274.1\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precurso... gi\|62859181, gi\|... - gi\|89268219\|emb\|CAJ83451.1\| ribosomal protein S27a [Xenopus tropicalis], gi\|62859181\|ref\|NP_00101617... ENSCJAT000000195... - null, null	197.0	[0..1]	[149..1]
RS27A_MOUSE - Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=1 SV=2 RS27A_RAT - Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=2	196.0	[0..1]	[149..1]

Back

Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN  60
   61 IQKESTLHLV LRLRGGGKKR KKKTYTTPKK IKHKHKKVEL AVLKYYKVED DGSVKRLRRE 120
  121 CPNCGASTFM ANHKDRLYCG RCHLTLKLEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	2ojrA
Description:	No description for 2ojrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits