YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC965.13
Organism:	Schizosaccharomyces pombe
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC965.13.

Description	E-value	Query Range	Subject Range
gi\|70984531, gi\|... - gi\|70984531\|ref\|XP_747772.1\| MFS multidrug transporter [Aspergillus fumigatus Af293], gi\|66845399\|gb... gi\|159122556 - gi\|159122556\|gb\|EDP47677.1\| MFS multidrug transporter, putative [Aspergillus fumigatus A1163]	227.0	[0..36]	[519..113]
gi\|39944294, gi\|... - gi\|39944294\|ref\|XP_361684.1\| hypothetical protein MGG_04158 [Magnaporthe grisea 70-15], gb\|EAA50399....	226.0	[0..9]	[532..47]
gi\|42554903, gi\|... - gi\|46136363\|ref\|XP_389873.1\| hypothetical protein FG09697.1 [Gibberella zeae PH-1], gi\|42554903\|gb\|E...	222.0	[0..1]	[534..34]
gi\|49072098, gi\|... - gi\|71016129\|ref\|XP_758870.1\| hypothetical protein UM02723.1 [Ustilago maydis 521], ref\|XP_400338.1\| ...	220.0	[0..5]	[532..87]
gi\|88184223, gi\|... - gi\|88184223\|gb\|EAQ91691.1\| hypothetical protein CHGG_03626 [Chaetomium globosum CBS 148.51], gi\|1162...	218.0	[0..2]	[466..104]
gi\|91078244 - gi\|91078244\|ref\|XP_970364.1\| PREDICTED: similar to CG10960-PB, isoform B [Tribolium castaneum]	211.0	[0..2]	[528..597]
gi\|40745169, gi\|... - gi\|67904012\|ref\|XP_682262.1\| hypothetical protein AN8993.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	209.0	[0..58]	[516..7]
gi\|49650092 - gi\|49650092\|emb\|CAG79818.1\| YALI0E21241p [Yarrowia lipolytica] gi\|49650092, gi\|... - gi\|50553624\|ref\|XP_504223.1\| YALI0E21241p [Yarrowia lipolytica], gi\|49650092\|emb\|CAG79818.1\| unnamed...	209.0	[0..16]	[530..64]
gi\|21214009 - gi\|21214009\|emb\|CAD32176.1\| multidrug resistant protein [Acremonium chrysogenum]	208.0	[0..21]	[524..17]
gi\|169597637, gi... - gi\|169597637\|ref\|XP_001792242.1\| hypothetical protein SNOG_01606 [Phaeosphaeria nodorum SN15], gi\|11...	208.0	[0..7]	[536..133]

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Predicted Domain #1

Region A:
Residues: [1-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILNVIRSH HDVEPQNVEE EPPLTGQTIV TEDKLETSAK DKKHESPSMS EDEEGSVENV  60
   61 DAWDLTKALM SIDPNHPAHP HKWPLWKKLF VATVYTFLEV YVIWSSTACI NFFDIYQTNW 120
  121 HCSIQVSYLV QSLFIVGNAF GPMLLGPMSD IFGRKWVYVG SLILYIIFQI PQALAYNLPM 180
  181 MAINSAIAGA FGSSALANVA SSMCDIFTPE TVGFGISLFV WGANAGASIG SPIGEALYDH 240
  241 WRWFYWMNMI VGGFFVILCV LCPETLPVIN IMNYSSTTGE KTVQVSTLAK AKSAVVRTKF 300
  301 VLSTAFKLLC TEPIIMALGL YNGFAYGLIF LYLDGLFPVF VDNYKMGYMG ANLTYLNFLV 360
  361 GVTIVVMLQP IQNWLYRWDK RRHGGVARPE ARFLISLLTV WFFPAGLFWF AFTSDGRISW 420
  421 VSPLIAGGVL GVGDPQLWLA MINYITDSYP SVAGSAIAAF TLPSFAIAAV LVHLGIIMFD 480
  481 NMTTTWAMAT LAFISLSLVA TIYVIYFFGH LIRKHSRLAV TQQALQEAHD AKVLPEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.09176719149278	bayes_pls_golite062009
substrate-specific transporter activity	3.59744164024479	bayes_pls_golite062009
transmembrane transporter activity	3.5865018981083	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.54194478414824	bayes_pls_golite062009
ion transmembrane transporter activity	2.21266150105753	bayes_pls_golite062009
cation transmembrane transporter activity	1.79369588808394	bayes_pls_golite062009
active transmembrane transporter activity	1.59419818573076	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.24937104052238	bayes_pls_golite062009
secondary active transmembrane transporter activity	1.22264637452409	bayes_pls_golite062009
binding	1.01584233411372	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
polyol transmembrane transporter activity	0.924836669821548	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.812001619402678	bayes_pls_golite062009
symporter activity	0.74591237387473	bayes_pls_golite062009
solute:cation symporter activity	0.74591237387473	bayes_pls_golite062009
cation:sugar symporter activity	0.143419068761182	bayes_pls_golite062009
sugar:hydrogen symporter activity	0.143419068761182	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: