YRC Public Data Repository - Protein Structure Prediction

Protein:	alg3
Organism:	Schizosaccharomyces pombe
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alg3.

Description	E-value	Query Range	Subject Range
gi\|133778113, gi... - gi\|76607389\|ref\|XP_871059.1\| PREDICTED: similar to Not56-like protein isoform 1 [Bos taurus], gi\|134...	503.0	[0..7]	[401..26]
CE32691 - status:Partially_confirmed UniProt:Q9NAP5 protein_id:CAB70171.2	501.0	[0..16]	[406..12]
gi\|46101793, gi\|... - gi\|71024245\|ref\|XP_762352.1\| hypothetical protein UM06205.1 [Ustilago maydis 521], ref\|XP_403820.1\| ...	494.0	[0..14]	[400..12]
gi\|57109914 - gi\|57109914\|ref\|XP_535823.1\| PREDICTED: similar to Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannos...	493.0	[0..7]	[401..26]
gi\|46136275, gi\|... - gi\|46136275\|ref\|XP_389829.1\| hypothetical protein FG09653.1 [Gibberella zeae PH-1], gi\|42553333\|gb\|E...	491.0	[0..25]	[404..29]
gi\|157753044 - gi\|157753044\|ref\|XP_001680234.1\| Hypothetical protein CBG20997 [Caenorhabditis briggsae AF16] gi\|187023237, gi... - gi\|39591480\|emb\|CAE73534.1\| Hypothetical protein CBG20997 [Caenorhabditis briggsae], gi\|187023237\|em...	487.0	[0..16]	[406..12]
gi\|114590804 - gi\|114590804\|ref\|XP_516912.2\| PREDICTED: asparagine-linked glycosylation 3 isoform 4 [Pan troglodyte...	485.0	[0..14]	[401..33]
ALG3 - asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae) gi\|123992969, gi... - gi\|123999893\|gb\|ABM87455.1\| asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mann...	485.0	[0..14]	[401..33]
ALG3_NEUCR - Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase OS=Neurospora crassa (strain ATCC 246... ALG3_NEUCR - Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase OS=Neurospora crassa GN=alg-3 PE=3 SV...	479.0	[0..25]	[385..35]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVETRNSF NPFRVLFDLG SYGWLHPSRL LLLEIPFVFA IISKVPYTEI DWIAYMEQVN  60
   61 SFLLGERDYK SLVGCTGPLV YPGGHVFLYT LLYYLTDGGT NIVRAQYIFA FVYWITTAIV 120
  121 GYLFKIVRAP FYIYVLLILS KRLHSIFILR LFNDGFNSLF SSLFILSSCK KKWVRASILL 180
  181 SV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ACSVKMSSLL YVPAYLVLLL QILGPKKTWM HIFVIIIVQI LFSIPFLAYF WSYWTQAFDF  60
   61 GRAFDYKWTV NWRFIPRSIF ESTSFSTSIL FLHVALLVAF TCKHWNKLSR ATPFAMVNSM 120
  121 LTLKPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [309-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKLQLATPNF IFTALATSNL IGILCARSLH YQFYAWFAWY SPYLCYQASF PAPIVIGLWM  60
   61 LQEYAWNVFP STKLSSLIAV CVPLITILKL YTSDYRKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits