YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4B4.01c
Organism:	Schizosaccharomyces pombe
Length:	403 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4B4.01c.

Description	E-value	Query Range	Subject Range
PANK1_MOUSE - Pantothenate kinase 1 OS=Mus musculus GN=Pank1 PE=1 SV=1	494.0	[0..8]	[391..132]
gi\|76654550 - gi\|76654550\|ref\|XP_616001.2\| PREDICTED: similar to pantothenate kinase 1 isoform alpha [Bos taurus]	493.0	[0..53]	[391..392]
gi\|109089890 - gi\|109089890\|ref\|XP_001087260.1\| PREDICTED: similar to pantothenate kinase 1 isoform alpha isoform 4...	492.0	[0..53]	[391..230]
PANK1 - pantothenate kinase 1 gi\|162319322, gi... - gi\|225000860\|gb\|AAI72476.1\| Pantothenate kinase 1 [synthetic construct], gi\|162319322\|gb\|AAI56382.1\|...	492.0	[0..53]	[391..230]
gi\|114631728 - gi\|114631728\|ref\|XP_001143095.1\| PREDICTED: pantothenate kinase 1 isoform 3 [Pan troglodytes]	492.0	[0..53]	[391..230]
gi\|62642196 - gi\|62642196\|ref\|XP_215283.3\| PREDICTED: similar to Pantothenate kinase 1 (Pantothenic acid kinase 1)...	492.0	[0..53]	[391..182]
gi\|50749500 - gi\|50749500\|ref\|XP_421664.1\| PREDICTED: similar to pantothenate kinase 1 gamma [Gallus gallus]	485.0	[0..57]	[391..247]
PANK2_ARATH - Pantothenate kinase 2 OS=Arabidopsis thaliana GN=PANK2 PE=1 SV=2	484.0	[0..14]	[391..35]

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Predicted Domain #1

Region A:
Residues: [1-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETECGRFS TISRETISNV ERQLSQPPSV WLNLTGARII ENEGQFDKDI ALPNNKSHVT  60
   61 HIAVDIGGSL AKVMYYVCES SSPSSSSSSI SEAENYTGGR LSFMIFETAK IEDCIQFMAN 120
  121 LIDNHVKNCN KKKITLIATG GGAYKFYDRM SKQLDIKVIR EDEMECLIMG LNYFVSCIPR 180
  181 EVFVLDLDTC ELTFQNHLNC YHYPHMLVNI GSGVSILKVT GPSQFERIGG SSLGGGTLWG 240
  241 LLSLLTPANS FDEMLELSKG GDNTSVDMLV GDIYGKDIGY ERFGLKSTTI ASSFGKVFRE 300
  301 RKPLEEFAPQ DISRSLLLAI SNNIGQIAYL HAQKHNVQNI YFGGSFIRNH VQTMHTLTYA 360
  361 IQYWSNHTMN AYFLRHEGYL GVFGAFMKYA TSQPSNVPVP SIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	134.0
Match:	2i7nA
Description:	No description for 2i7nA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of cytoskeleton	2.46121037473545	bayes_pls_golite062009
cytoskeletal protein binding	2.20983242331685	bayes_pls_golite062009
binding	1.97067859459221	bayes_pls_golite062009
pantothenate kinase activity	1.44039088435404	bayes_pls_golite062009
carbohydrate kinase activity	1.3713660758447	bayes_pls_golite062009
protein binding	1.16405332128302	bayes_pls_golite062009
actin binding	1.03829083423378	bayes_pls_golite062009
structural molecule activity	0.963253603902027	bayes_pls_golite062009
hydrolase activity	0.921698825968978	bayes_pls_golite062009
kinase activity	0.90616568759573	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.797242642077629	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.59082563232385	bayes_pls_golite062009
hexokinase activity	0.49038289556657	bayes_pls_golite062009
myosin binding	0.31501932970343	bayes_pls_golite062009
catalytic activity	0.296484721581333	bayes_pls_golite062009
transferase activity	0.105619024604158	bayes_pls_golite062009
nucleic acid binding	0.101675282305395	bayes_pls_golite062009
unfolded protein binding	0.0304569608189402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: