YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBP26C9.03c
Organism:	Schizosaccharomyces pombe
Length:	584 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP26C9.03c.

Description	E-value	Query Range	Subject Range
FET4 - Low-affinity Fe(II) transporter of the plasma membrane FET4_YEAST - Low-affinity Fe(2+) transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FE...	810.0	[0..75]	[570..2]
gi\|49525289 - gi\|49525289\|emb\|CAG58906.1\| unnamed protein product [Candida glabrata] gi\|50287105, gi\|... - gi\|50287105\|ref\|XP_445982.1\| unnamed protein product [Candida glabrata], gi\|49525289\|emb\|CAG58906.1\|...	518.0	[0..75]	[570..2]
gi\|50309197, gi\|... - gi\|50309197\|ref\|XP_454604.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643739\|emb\|CAG9969... gi\|49643739 - gi\|49643739\|emb\|CAG99691.1\| KLLA0E14499p [Kluyveromyces lactis]	470.0	[0..75]	[573..2]
gi\|70993042, gi\|... - gi\|70993042\|ref\|XP_751369.1\| low affinity iron transporter [Aspergillus fumigatus Af293], gi\|6684900...	367.0	[0..81]	[573..4]
gi\|83774628 - gi\|83774628\|dbj\|BAE64751.1\| unnamed protein product [Aspergillus oryzae] gi\|169782844 - gi\|169782844\|ref\|XP_001825884.1\| hypothetical protein [Aspergillus oryzae RIB40]	346.0	[0..76]	[570..3]
gi\|91780143, gi\|... - gi\|91780143\|ref\|YP_555350.1\| hypothetical protein Bxe_C0074 [Burkholderia xenovorans LB400], gi\|9169...	126.0	[0..149]	[235..37]
gi\|33565997 - gi\|33565997\|emb\|CAE36551.1\| putative membrane protein [Bordetella parapertussis] gi\|33595918 - gi\|33595918\|ref\|NP_883561.1\| hypothetical protein BPP1249 [Bordetella parapertussis 12822]	119.0	[0..149]	[220..31]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASITEIDS ISEESNVESV SHLQHSPSFE KKGADFSISL NEKKDFASPI TEEIPSPDGI  60
   61 ATPEPETKKK LSFGARVWDL ICSPGRQHDV CVAAPTQLVR SCDDYANSAS TLVTNDDGTK 120
  121 TKVDSDEKKH KHKNVR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [137-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYIRFKHVDI GGRIFDLITR LAGTSFTFIL MLIILIVWAI VGGIYRAPDN WQIVMQDGSS  60
   61 IQCYVSDTLL MRQQQNQHIQ VLTMISQLRS RLLTTSRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [235-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGPVLNDKTK ISSVNVALMK DDVGDAEKLP TENWFDFICN YVSFMVGSII FLVVYWIGIF  60
   61 IWIGFGRMLG WSDEWQLYIN TAVAVELTFT SVFLQNVRHR HMKYIDRCVT SIFRIDSVIE 120
  121 EELRRMMGDK E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [366-584]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNEEITIKMD KINLGERSID YYADLIGSGV GVVVSTCVFV AWIAIGNVMH WDSNWWLIIG  60
   61 TYTGLVGFLD GFVLRNVYFR ESSKEATEIQ TLIDEDYALY QKLDLPLPHE HITNYKSTFG 120
  121 GSLSQWIGWL CALPISVLFS VFVILGLIIA AGSLRFNETA QLFCNTPTMI IEGALLIVLI 180
  181 EAHNIANLKR RIQFRQIHLR RLTILKMLAG DNYSTTSTV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits