| Protein: | SPBC800.13 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 479 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC800.13.
| Description | E-value | Query Range |
Subject Range |
|
|
379.0 | [0..1] | [470..1] |
|
|
329.0 | [0..1] | [470..1] |
|
|
318.0 | [0..52] | [405..1] |
|
|
303.0 | [0..1] | [470..1] |
|
|
298.0 | [0..1] | [470..1] |
|
|
292.0 | [0..1] | [470..1] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MASHNYETPL KSSSFQHLVG TLSQRRHFTP SRSRYTPRSA QRTVTPHKRR ALARRNSLAR 60
61 RRSNVFSAT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.581 | N/A | N/A | a.8.11 | Description not found. |
| View | Download | 0.467 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.457 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.444 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.438 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.435 | N/A | N/A | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.412 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.385 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
|
Region A: Residues: [70-379] |
1 11 21 31 41 51
| | | | | |
1 TPRDILRMLS RALAKNPVPS PAESESSERR HTPQTNSQKS QKTPRLSSNK RRTLKNDAKQ 60
61 RNSQSPGTDT SDANLTIQSI EAPRRAPQRL SDFFTPDGRR VSNIRDSLIS EKRLENNIDQ 120
121 VQESALSTAS SNRLIDLKND EVPIFRIPLS DYETDDMDDG TPLQRHVATL NQYQSPIFNL 180
181 GPDILEDEPS YSSRASRSRQ SSLSSRLSEL PSKRASLEIL RRENTFPADP IQEFGEKAYN 240
241 ERELMEEISN FEPLLDDNLL ENANEAVNSP VVDAPMDADS ALEIPNDEDN GEILNKLKDS 300
301 PFKKPKRRYS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [380-479] |
1 11 21 31 41 51
| | | | | |
1 KSSTLVLPET NIRKLANSYS QKKIAGSVIE ELTTASELFF KQIANDLSAF ADHAHRKTID 60
61 TQDVVLLMKR QRKISEKKSL SSLMQQYLSR EIAPPAIKRT
|
| Detection Method: | |
| Confidence: | 33.69897 |
| Match: | 1n1jA |
| Description: | Nuclear transcription factor Y subunit beta (Nf-Yb3) |
Matching Structure (courtesy of the PDB): |
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