YRC Public Data Repository - Protein Structure Prediction

Protein:	sst2
Organism:	Schizosaccharomyces pombe
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sst2.

Description	E-value	Query Range	Subject Range
gi\|17390801 - gi\|17390801\|gb\|AAH18343.1\| Stambpl1 protein [Mus musculus]	333.0	[0..7]	[433..8]
gi\|165970954, gi... - gi\|169234828\|ref\|NP_001108520.1\| hypothetical protein LOC687696 [Rattus norvegicus], gi\|165970954\|gb...	331.0	[0..7]	[433..23]
STAMBPL1 - STAM binding protein-like 1	321.0	[0..7]	[433..23]
gi\|114631679, gi... - gi\|114631681\|ref\|XP_521549.2\| PREDICTED: associated molecule with the SH3 domain of STAM (AMSH) like...	321.0	[0..7]	[433..23]
STALP_PONAB - AMSH-like protease OS=Pongo abelii GN=STAMBPL1 PE=2 SV=1 STALP_PONPY - AMSH-like protease - Pongo pygmaeus (Orangutan)	319.0	[0..7]	[433..23]
gi\|115497652, gi... - gi\|76654504\|ref\|XP_582671.2\| PREDICTED: similar to associated molecule with the SH3 domain of STAM (...	318.0	[0..7]	[433..23]
gi\|18000291 - gi\|18000291\|gb\|AAL54907.1\|AF164597_1 AMSH-like [Lapemis hardwickii]	306.0	[0..7]	[433..23]
gi\|50749486 - gi\|50749486\|ref\|XP_421657.1\| PREDICTED: similar to associated molecule with the SH3 domain of STAM (...	305.0	[0..7]	[433..592]
gi\|45360673, gi\|... - gi\|45360673\|ref\|NP_989010.1\| associated molecule with the SH3 domain of STAM (AMSH) like protein [Xe...	303.0	[0..7]	[433..21]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILQGSEAP LSYEEIASRA GAFDFNKNIP LKNWLRTSTT ISKQAHVYVS EHDYSNGVFL  60
   61 LFRYCELFMK CQKHPDAAAY KKELFDYYQG VRNALEEIEL IKPIVKEQYE QYQCQKNDLD 120
  121 DLKKLSMKDS QPSLEKPVSY VDEPILEQWA LSDLQILPPS STDLLSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	2a9uA
Description:	Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [168-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSQKLSKSSS DLPQFDYPSL NSSPTFNSNL PISSSRFEKT SLSDSKLVSP EPLDDNKDIQ  60
   61 FIKKPIYTRT SEPRPK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [244-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAGTFKIHAY TEGGKPLRTI YLPKLLKKVF LDVVKPNTKK NLETCGILCG KLRQNAFFIT  60
   61 HLVIPLQEAT SDTCGTTDEA SLFEFQDKHN LLTLGWIHTH PTQTCFMSSV DLHTHCSYQL 120
  121 MLPEAIAIVM APSKNTSGIF RLLDPEGLQT IVKCRKPGLF HPHEGKVYTM VAQPGHVREI 180
  181 NSKLQVVDLR VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2p87A
Description:	No description for 2p87A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits