YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1711.05
Organism:	Schizosaccharomyces pombe
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1711.05.

Description	E-value	Query Range	Subject Range
gi\|24020878, gi\|... - gi\|50979202\|ref\|NP_001003352.1\| neurofilament, heavy polypeptide 200kDa [Canis lupus familiaris], gi...	183.0	[0..3]	[448..505]
gi\|195934791 - gi\|195934791\|gb\|AAI68406.1\| Neurofilament, heavy polypeptide [synthetic construct] NFH_MOUSE - Neurofilament heavy polypeptide OS=Mus musculus GN=Nefh PE=1 SV=3	182.0	[0..4]	[449..504]
gi\|601930, gi\|284667 - gi\|601930\|gb\|AAA57152.1\| neurofilament-H, pir\|\|A43427 neurofilament triplet H1 protein - rabbit (fra...	177.0	[0..7]	[442..40]
gi\|70873262 - gi\|70873262\|gb\|EAN87106.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71413651 - gi\|71413651\|ref\|XP_808957.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	172.0	[0..4]	[447..818]
gi\|76639351 - gi\|76639351\|ref\|XP_870725.1\| PREDICTED: similar to neurofilament, heavy polypeptide 200kDa isoform 2...	168.0	[0..3]	[443..492]
gi\|205686 - gi\|205686\|gb\|AAA41695.1\| heavy neurofilament subunit	167.0	[0..4]	[434..232]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEISMKSKV CPLIYHFLQE NGYVKTAQTF LKETGDKDLA KGKVKKNLLD LLSQKEFLPY  60
   61 LTTEDVGKHK KTKESLEKSN DDSQKISKKG APPEKAHSSS EASGSGSSSD ESDSSSSESE 120
  121 SSSEDNDSSS SSSDSESESS SEDSDSSSSS SDSESESSSE GSDSSSSSSS SESESSSEDN 180
  181 DSSSSSSDSE SESSSEDSDS SSSSSDSESE SSSEGSDSSS SSSSSESESS SEDNDSSSSS 240
  241 SDSESESSSE DSDSSSSSSD SESES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [266-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKDSDSSSN SSDSEDDSSS DSSDSESESS SEDSDSTSSS SDSDSSSSSE DGNSNTDTTT  60
   61 SGEVSAQSST NSTSSEESTS VKDEDSSKIH DKSLKRKHED DESSTS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [372-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKSSRTTKTP FTRVGDPSQW DFASPALRDN SFNFEDDYGT LANRDLIVTR GKGFRQEKNK  60
   61 KKRGSYRGGR INTEVRSFKF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.568636
Match:	PF05022.3
Description:	No description for PF05022.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits