YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC19C7.06
Organism:	Schizosaccharomyces pombe
Length:	716 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC19C7.06.

Description	E-value	Query Range	Subject Range
gi\|71004672, gi\|... - gi\|71004672\|ref\|XP_757002.1\| hypothetical protein UM00855.1 [Ustilago maydis 521], ref\|XP_398470.1\| ...	475.0	[0..3]	[716..1]
gi\|46433496, gi\|... - gi\|77023056\|ref\|XP_888972.1\| hypothetical protein CaO19_6701 [Candida albicans SC5314], gi\|68488040\|... gi\|76573785 - gi\|76573785\|dbj\|BAE44869.1\| hypothetical protein [Candida albicans]	454.0	[0..28]	[716..6]
gi\|71748872 - gi\|71748872\|ref\|XP_827775.1\| prolyl-tRNA synthetase [Trypanosoma brucei TREU927] gi\|70833159 - gi\|70833159\|gb\|EAN78663.1\| prolyl-trna synthetase, putative [Trypanosoma brucei]	446.0	[0..4]	[716..102]
YHI0_YEAST - Putative proline--tRNA ligase YHR020W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YH... YHR020W - Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	442.0	[0..35]	[716..11]
gi\|134086955, gi... - gi\|50260133\|gb\|EAL22794.1\| hypothetical protein CNBB0150 [Cryptococcus neoformans var. neoformans B-...	439.0	[0..2]	[716..25]
gi\|58264302, gi\|... - gi\|58264302\|ref\|XP_569307.1\| proline-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21], gi...	438.0	[0..2]	[716..25]
gi\|49653940 - gi\|49653940\|emb\|CAG86351.1\| DEHA2C13706p [Debaryomyces hansenii] gi\|49653940, gi\|... - gi\|50419495\|ref\|XP_458274.1\| hypothetical protein DEHA0C14718g [Debaryomyces hansenii CBS767], gi\|49...	437.0	[0..30]	[716..5]
gi\|49524157 - gi\|49524157\|emb\|CAG57748.1\| unnamed protein product [Candida glabrata] gi\|49524157, gi\|... - gi\|50284855\|ref\|XP_444855.1\| hypothetical protein CAGL0A02090g [Candida glabrata CBS138], gi\|4952415...	436.0	[0..45]	[716..17]
gi\|70885272 - gi\|70885272\|gb\|EAN98098.1\| prolyl-tRNA synthetase, putative [Trypanosoma cruzi] gi\|71665969 - gi\|71665969\|ref\|XP_819949.1\| prolyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener]	436.0	[0..4]	[716..92]
gi\|83282659 - gi\|83282659\|ref\|XP_729866.1\| prolyl-tRNA synthetase [Plasmodium yoelii yoelii str. 17XNL] gi\|23488909 - gi\|23488909\|gb\|EAA21431.1\| prolyl-tRNA synthetase, putative [Plasmodium yoelii yoelii]	434.0	[0..5]	[716..19]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDSLVSCL EQLITDDLKL VEHQEVSNGA TWASALQSTK DVPSHALTKT IVLKPKTAKS  60
   61 QTVVPIILAA LETT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1vjfA
Description:	Crystal structure of putative DNA-binding protein from Caulobacter crescentus at 1.62 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STPSGIAAKA VGSKEARMAA ADLVEEVFGI PPTDVGIFSV NKENASKVHV VLDAALIQHN  60
   61 GLLAFHPSSS AKTVFVSPAA VQTYLKSVGV NPIIVDFSAP GSATAPSKPA AQKKKAEPSK 120
  121 NDAAIENAAL IGITV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.39794
Match:	2dq3A
Description:	No description for 2dq3A was found.

Predicted Domain #3

Region A:
Residues: [210-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKDADFPNWY QQVLTKSDMI EYYDISGCYI LKPWSYSIWE AIQGWFDKEI KKLGVRNGYF  60
   61 PLFVSSKVLE KEKDHVEGFA PEVAWVTRAG TSELDEPIAI RPTSETVMYP YYAKWIRSHR 120
  121 DLPLKLNQWN SVVRWEFKNP QPFLRTREFL WQEGHTAHMT LEGATEEVHQ ILDLYARIYT 180
  181 DLLAVPVIKG VKSENEKFAG GMFTTTVEGY IP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.30103
Match:	2q7eA
Description:	No description for 2q7eA was found.

Predicted Domain #4

Region A:
Residues: [422-559]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTGRGIQGAT SHCLGQNFSK MFNIVVEDPN AEIGPTGERP KLFVWQNSWG LSTRTIGVAV  60
   61 MVHGDDKGLK LPPAIALVQS VVVPCGITNK TTDQERNEIE GFCSKLADRL NAADIRTEAD 120
  121 LRAYTPGYKF SHWEMKGV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.25
Match:	2j3lA
Description:	No description for 2j3lA was found.

Predicted Domain #5

Region A:
Residues: [560-644]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRLEYGPND AKKNQVTAVR RDTFEKIPVP LNNLEKGVSD LLAKIQTNMY ETAKAERDAH  60
   61 VVKVKEWADF VPALNKKNIV MIPWC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1nj8A
Description:	Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [645-716]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTECEKEIK KNSARQVNGD EPEDEKAPSM GAKSLCIPLE QPSGEDAIIE GTTKCAGCGN  60
   61 LAKVWGLFGR SY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.30103
Match:	1h4qA
Description:	Prolyl-tRNA synthetase (ProRS) domain; C-terminal domain of ProRS; Prolyl-tRNA synthetase (ProRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits