YRC Public Data Repository - Protein Structure Prediction

Protein:	atg9
Organism:	Schizosaccharomyces pombe
Length:	702 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg9.

Description	E-value	Query Range	Subject Range
ATG9_NEUCR - Autophagy-related protein 9 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM ... ATG9_NEUCR - Autophagy-related protein 9 OS=Neurospora crassa GN=atg-9 PE=3 SV=1	918.0	[0..2]	[696..19]
ATG9_PODAS - Autophagy-related protein 9 OS=Podospora anserina GN=ATG9 PE=3 SV=1 gi\|189091792 - gi\|189091792\|ref\|XP_001929729.1\| [Podospora anserina]	900.0	[0..2]	[696..17]
ATG9_MAGGR - Autophagy-related protein 9 OS=Magnaporthe grisea GN=ATG9 PE=3 SV=1 ATG9_MAGO7 - Autophagy-related protein 9 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG9... gi\|216408397 - gi\|216408397\|gb\|ACJ72888.1\| ATG9 protein [Magnaporthe oryzae]	889.0	[0..7]	[696..20]
gi\|116089282, gi... - gi\|73696301\|tpg\|DAA05199.1\| TPA_exp: autophagy 9-like 1 protein [Homo sapiens], gi\|119591113\|gb\|EAW7...	813.0	[0..128]	[700..9]
gi\|114583423, gi... - gi\|114583423\|ref\|XP_001161268.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114...	813.0	[0..128]	[700..9]
ATG9A_PONAB - Autophagy-related protein 9A OS=Pongo abelii GN=ATG9A PE=2 SV=1 ATG9A_PONPY - Autophagy-related protein 9A - Pongo pygmaeus (Orangutan)	813.0	[0..128]	[700..9]
ATG9_ASHGO - Autophagy-related protein 9 OS=Ashbya gossypii GN=ATG9 PE=3 SV=1 ATG9_ASHGO - Autophagy-related protein 9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-...	813.0	[0..3]	[694..85]
ATG9_ASPFU - Autophagy-related protein 9 OS=Aspergillus fumigatus GN=atg9 PE=3 SV=1 gi\|159124685 - gi\|159124685\|gb\|EDP49803.1\| autophagy protein Apg9, putative [Aspergillus fumigatus A1163] ATG9_ASPFU - Autophagy-related protein 9 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGS...	812.0	[0..7]	[695..21]
gi\|109101062, gi... - gi\|109101062\|ref\|XP_001098391.1\| PREDICTED: APG9 autophagy 9-like 1 isoform 3 [Macaca mulatta], gi\|1...	812.0	[0..128]	[700..9]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYQPAQNKK QYDDLADIEA QNNVPNTQEV LEAWQESLDS DEDESSPLEE SNGFTISEHD  60
   61 DFVKSVPRKN NPTDLLYSGK LLDSDEPPSV HGNSSKVPSK HPSPSFPETT SLRNLQNGSK 120
  121 QKPALPNFND PHFYNEDVTR SGHPNRSIYT QLPRNEFSNA RVLWNRLSAR DRVLWRWANV 180
  181 E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLDSFLQQVY TYYTGKGLSC IIVHRLFQIL TVSFVIGFTT FITSCIDWPA VTPHGSLAGV  60
   61 TKSQCIAQMS PITYLVLWLF LSFLLALWIY YLTDIPRLWQ MREFYIHALK IATADMPTVS 120
  121 WQRVLYRLLK LKNVNAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [319-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAEDGRVVSL HNMKRLDAYA IANRIMRKDN YFIALINNGI INIELPLLHR RILTHTTEWN  60
   61 INWCIFNFVF DEQGQLRSAF RNPNSRKRLS EELRRRFIVA GFLNCLFAPI VAIYLVIHNF 120
  121 FRYFNEYHKN PGALSTRRYT PLALWTFREY N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [470-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELQHFFDERI NDSYAAASHY VSQFPDFNMI RLFKYISFIL GSFTAILVII TVFDPELMVT  60
   61 FEITKDRSVL FYLGLFGSLI AVSRSII

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [557-702]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDETLVFAPE KALRRVITFT HYMPGWWSDN MHSKAVQQEF CSLYSYRIVN LLWEILGILL  60
   61 TPVLLFFTFP SCSQDIVDFF REHTINVEGV GYVCSYAVFQ DNPPYESVAS LVQSRKISPL 120
  121 IQNKPELSRI SFYEQFNTEA PRRDLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits