YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2G2.17c
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2G2.17c.

Description	E-value	Query Range	Subject Range
NCA3 - Protein that functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (... gi\|207344080 - gi\|207344080\|gb\|EDZ71336.1\| YJL116Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409389 - gi\|190409389\|gb\|EDV12654.1\| protein NCA3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi\|151945010 - gi\|151945010\|gb\|EDN63265.1\| nuclear control of ATPase [Saccharomyces cerevisiae YJM789] NCA3_YEAST - Beta-glucosidase-like protein NCA3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	431.0	[0..10]	[319..11]
gi\|44984042 - gi\|44984042\|gb\|AAS53052.1\| AER372Cp [Ashbya gossypii ATCC 10895] gi\|44984042, gi\|... - gi\|45190974\|ref\|NP_985228.1\| AER372Cp [Ashbya gossypii ATCC 10895], gi\|44984042\|gb\|AAS53052.1\| AER37...	420.0	[0..29]	[319..158]
gi\|50310521, gi\|... - gi\|50310521\|ref\|XP_455280.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644416\|emb\|CAG9798... gi\|49644416 - gi\|49644416\|emb\|CAG97988.1\| KLLA0F04433p [Kluyveromyces lactis]	412.0	[0..47]	[319..145]
gi\|49527452, gi\|... - gi\|50291417\|ref\|XP_448141.1\| unnamed protein product [Candida glabrata], gi\|49527452\|emb\|CAG61092.1\|... gi\|49527452 - gi\|49527452\|emb\|CAG61092.1\| unnamed protein product [Candida glabrata]	403.0	[0..43]	[319..155]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNNFLCFA VSAIPLVSAM PLGNAPYHHH HHAGLNASNI TVGVNVTNTT AFSKRDGGFP  60
   61 DGVYDCSSFP DDQNGVVRLD YLGFGGWSGV QKNDGKYGTA STCQDNTYCS YACKPGMSKT 120
  121 QWPSEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNGVSVGGL YCKNGKLYLT QKDNSNLCED GKGTAYVKNT LSSNVAICRT DYPGTENMNI  60
   61 PTNIDGGSKQ PLSDVDEDSY YNWGGKKTSA QYYVNKSGRS AEDVCVWGNE GDDYGNWAPM 120
  121 NFGSGYTDGK TWLSMSFNPL SSAKLDYNIR IKSDGGSLSG DCYYEDGSFH GSTADSSGCT 180
  181 VSVTGGNAYF ELY