YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2G2.17c
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2G2.17c.

Description	E-value	Query Range	Subject Range
NCA3 - Protein that functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (... gi\|207344080 - gi\|207344080\|gb\|EDZ71336.1\| YJL116Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409389 - gi\|190409389\|gb\|EDV12654.1\| protein NCA3, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi\|151945010 - gi\|151945010\|gb\|EDN63265.1\| nuclear control of ATPase [Saccharomyces cerevisiae YJM789] NCA3_YEAST - Beta-glucosidase-like protein NCA3, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	431.0	[0..10]	[319..11]
gi\|44984042 - gi\|44984042\|gb\|AAS53052.1\| AER372Cp [Ashbya gossypii ATCC 10895] gi\|44984042, gi\|... - gi\|45190974\|ref\|NP_985228.1\| AER372Cp [Ashbya gossypii ATCC 10895], gi\|44984042\|gb\|AAS53052.1\| AER37...	420.0	[0..29]	[319..158]
gi\|50310521, gi\|... - gi\|50310521\|ref\|XP_455280.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644416\|emb\|CAG9798... gi\|49644416 - gi\|49644416\|emb\|CAG97988.1\| KLLA0F04433p [Kluyveromyces lactis]	412.0	[0..47]	[319..145]
gi\|49527452, gi\|... - gi\|50291417\|ref\|XP_448141.1\| unnamed protein product [Candida glabrata], gi\|49527452\|emb\|CAG61092.1\|... gi\|49527452 - gi\|49527452\|emb\|CAG61092.1\| unnamed protein product [Candida glabrata]	403.0	[0..43]	[319..155]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNNFLCFA VSAIPLVSAM PLGNAPYHHH HHAGLNASNI TVGVNVTNTT AFSKRDGGFP  60
   61 DGVYDCSSFP DDQNGVVRLD YLGFGGWSGV QKNDGKYGTA STCQDNTYCS YACKPGMSKT 120
  121 QWPSEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNGVSVGGL YCKNGKLYLT QKDNSNLCED GKGTAYVKNT LSSNVAICRT DYPGTENMNI  60
   61 PTNIDGGSKQ PLSDVDEDSY YNWGGKKTSA QYYVNKSGRS AEDVCVWGNE GDDYGNWAPM 120
  121 NFGSGYTDGK TWLSMSFNPL SSAKLDYNIR IKSDGGSLSG DCYYEDGSFH GSTADSSGCT 180
  181 VSVTGGNAYF ELY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.248	d.19.1	MHC antigen-recognition domain
View	Download	0.234	b.1.1	Immunoglobulin
View	Download	0.210	b.60.1	Lipocalins
View	Download	0.208	b.61.1	Avidin/streptavidin
View	Download	0.203	b.18.1	Galactose-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits