YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC63.13
Organism:	Schizosaccharomyces pombe
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC63.13.

Description	E-value	Query Range	Subject Range
DNAJ_THEVO - Chaperone protein dnaJ OS=Thermoplasma volcanium GN=dnaJ PE=3 SV=1 DNAJ_THEVO - Chaperone protein DnaJ OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 154...	187.0	[0..1]	[205..1]
gi\|22298332, gi\|... - gi\|22298332\|ref\|NP_681579.1\| heat shock protein [Thermosynechococcus elongatus BP-1], gi\|22294511\|db...	185.0	[0..1]	[207..3]
DNAJ_SYNEL - Chaperone protein dnaJ OS=Synechococcus elongatus GN=dnaJ PE=3 SV=2 DNAJ_THEEB - Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2	185.0	[0..1]	[207..1]
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	184.0	[0..1]	[208..1]
DNAJ_CHRSD - Chaperone protein DnaJ OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)...	183.0	[0..2]	[208..3]
gi\|110739057, gi... - gi\|30699483\|ref\|NP_849911.1\| DNAJ heat shock protein, putative [Arabidopsis thaliana], gi\|30699481\|r...	182.0	[0..4]	[207..75]
DNAJ_THEAC - Chaperone protein DnaJ OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 1... DNAJ_THEAC - Chaperone protein dnaJ OS=Thermoplasma acidophilum GN=dnaJ PE=3 SV=1	181.0	[0..1]	[205..1]
gi\|47574814 - gi\|47574814\|ref\|ZP_00244849.1\| COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger dom... DNAJ_METPP - Chaperone protein DnaJ OS=Methylibium petroleiphilum (strain PM1) GN=dnaJ PE=3 SV=1	181.0	[0..2]	[206..3]
DNAJ_SHIDS - Chaperone protein DnaJ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaJ PE=3 SV=1	181.0	[0..1]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKDYYAILN ITPKASAEEI KYAYKKAALE THPDRVSPSA RARATEQFQL VNEAYYVLSD  60
   61 NSRRAQYDRE SASSSAKPRQ SFFSRTNPQP QSQSQQGGPS FGFRQSFSDS QFEQVFNEMM 120
  121 NET

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.823553393353769	bayes_pls_golite062009
protein binding	0.40147996507406	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [124-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STRGIANAFW TIVGTLAGAA LGFITFDVPG VLVGSAAGAK LGRIRDTHGK SAYSVFQDMP  60
   61 AVEKARILTQ FLSHLLNSSK QFTSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.30103
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: