YRC Public Data Repository - Protein Structure Prediction

Protein:	swd3
Organism:	Schizosaccharomyces pombe
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swd3.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	420.0	[0..2]	[379..1319]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	402.0	[0..2]	[379..1065]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	398.0	[0..2]	[379..628]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	394.0	[0..2]	[375..862]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	392.0	[0..2]	[376..1095]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTAQQFPL NHDLQVQKDQ KGVVEEDEEQ IHKRIRNYES HSGFSEYCTL FGHEKSVTCV  60
   61 SVSPNKRWIA TSSSDGTIKI WSALTFRLEC TLFGHYRGIS QVKWATGSKY LASASDDKTI 120
  121 RIWDFEKRCS VRCLKGHTNY VSSIDFNPLG TLLVSGSWDE TVRIWNLQDG TCLRMLPAHS 180
  181 EPIISVSISA DGTLCATASY DGMARIWDVL SGQCLKTLVE PINVPLSNLQ FTENRKYLLV 240
  241 SNLNSQIRLW DYRRNRVVRI FDSHVNTRYS MSWDCYSSKN IPKNTEALPN NDSSYPDDAE 300
  301 SFMHDAYLLI PSEDGTIQIT DPSTKIIIDD SIRHSDDPET SLLNVTSLGP FIITSGTDPY 360
  361 VRVWAPSLLL SKHEKDGFSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	2gnqA
Description:	No description for 2gnqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits