YRC Public Data Repository - Protein Structure Prediction

Protein:	ssr4
Organism:	Schizosaccharomyces pombe
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssr4.

Description	E-value	Query Range	Subject Range
gi\|46108460, gi\|... - gi\|46108460\|ref\|XP_381288.1\| hypothetical protein FG01112.1 [Gibberella zeae PH-1], gi\|42544811\|gb\|E...	420.0	[0..13]	[313..10]
gi\|28926759, gi\|... - gi\|32420187\|ref\|XP_330537.1\| predicted protein [Neurospora crassa], gi\|28926759\|gb\|EAA35724.1\| predi... gi\|85115943 - gi\|85115943\|ref\|XP_964960.1\| hypothetical protein NCU03101 [Neurospora crassa OR74A]	385.0	[0..5]	[313..1]
gi\|49093212, gi\|... - gi\|67526945\|ref\|XP_661534.1\| hypothetical protein AN3930.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	370.0	[0..13]	[313..8]
gi\|115398818, gi... - gi\|115398818\|ref\|XP_001214998.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	346.0	[0..13]	[313..8]
gi\|66848355, gi\|... - gi\|70991747\|ref\|XP_750722.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668483... gi\|159124284 - gi\|159124284\|gb\|EDP49402.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	331.0	[0..13]	[313..8]
gi\|116180432, gi... - gi\|88185141\|gb\|EAQ92609.1\| hypothetical protein CHGG_00844 [Chaetomium globosum CBS 148.51], gi\|1161...	314.0	[0..5]	[313..1]
gi\|38101570, gi\|... - gi\|39975359\|ref\|XP_369070.1\| hypothetical protein MG00174.4 [Magnaporthe grisea 70-15], gb\|EAA48516....	300.0	[0..13]	[313..10]
gi\|90306134, gi\|... - gi\|90306134\|gb\|EAS35765.1\| hypothetical protein CIMG_01119 [Coccidioides immitis RS], gi\|119193484\|r...	288.0	[0..13]	[313..17]
gi\|111068387 - gi\|111068387\|gb\|EAT89507.1\| hypothetical protein SNOG_02776 [Phaeosphaeria nodorum SN15]	244.0	[0..13]	[313..17]
gi\|83767178 - gi\|83767178\|dbj\|BAE57317.1\| unnamed protein product [Aspergillus oryzae] gi\|169769699 - gi\|169769699\|ref\|XP_001819319.1\| hypothetical protein [Aspergillus oryzae RIB40]	219.0	[0..105]	[313..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATMAAQSL LSIPVEYRSQ VWCRANLPYP PAPQLPIPAV VDILTKASQA LPQISFSWTL  60
   61 IDQPPDGSLF LVWQAPTLPS PPDGMHFMSN ERFFNMDVAG KVLEIHEAKH GFYP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSETRTMHVR CRYRLLGVGF DNFWLVHYFQ GSETDSIPAN ISVAKPPHLR RYPLPDVKTS  60
   61 PFLLQEPKKH IPEGTALSQR ETLPNMGSAQ MKSQSRTPSF SNVTTSPVPP INSNATAQTA 120
  121 EGHMGATNMT VDNMNKPSIP PNGNTSILMQ EDLEIEKGDV MDKLSPQQIC TARFIKHAEW 180
  181 MSQVLLTLQS VKDIEPPALW QEPNSMEELG KELKDNKEQL VKQDQKYQSL QGDLSYTDSM 240
  241 SNLLKEFSNI KSAEECDVLQ KKIEEFAEAK IVPLSHVTER S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits