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View Structure Prediction Details

Protein: SPBC336.05c
Organism: Schizosaccharomyces pombe
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC336.05c.

Description E-value Query
Range
Subject
Range
gi|5262781, gi|7... - pir||T10633 hypothetical protein T13K14.70 - Arabidopsis thaliana, gi|7268887|emb|CAB79091.1| putati...
153.0 [0..1] [259..703]
gi|114558122 - gi|114558122|ref|XP_524784.2| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
151.0 [0..3] [269..32]
gi|55958245 - gi|55958245|emb|CAI12930.1| chromosome 1 open reading frame 59 [Homo sapiens]
151.0 [0..3] [269..24]
gi|215767104, gi... - gi|215767104|dbj|BAG99332.1| unnamed protein product [Oryza sativa Japonica Group], gi|115470715|ref...
150.0 [0..1] [266..671]
gi|109012694 - gi|109012694|ref|XP_001087383.1| PREDICTED: similar to CG12367-PA [Macaca mulatta]
149.0 [0..3] [269..194]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVSSFYPPL HVQRRRKLFK ILQGGFPVRS LLDIGCGDAR FLSYLVPCND QVPIEFLAGI  60
   61 DINEQSIERA TEALQVRTED FLQLRWRPLH IELLLGNIKD FTHYKHVDAV VASEFIEHCQ 120
  121 VAEILAFEKL VFGNLKPNVC VVSTPNFEFN TIFEKLSTLT SSISSRTSTN FRHPEHVFEW 180
  181 DRKEFAKWAY KICKRYPEYT VEFTGCGLLN DLIDGDDLLH FRPSSTYGFC TQIAVFHQSK 240
  241 NNAASHCFLK DQNSSILLYK KITYPFMEQL FPPTVQQFMN LLKKAFFDHL FGRHCLLLFQ 300
  301 VIA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.39794
Match: 1g6q1
Description: Arginine methyltransferase, HMT1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [304-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKCALSVKLP FLFIWESSPL IRHAFHYDDS IYLSYCPELK KSKHKGIALA NSFSFRIAKV  60
   61 LKKSRIFIIT FHHYV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle