YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1734.09
Organism:	Schizosaccharomyces pombe
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1734.09.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	152.0	[0..2]	[313..321]
gi\|109470339 - gi\|109470339\|ref\|XP_001078382.1\| PREDICTED: similar to GDP-fucose transporter 1 isoform 1 [Rattus no...	138.0	[0..2]	[312..358]
gi\|113402542 - gi\|113402542\|ref\|XP_001128065.1\| PREDICTED: similar to solute carrier family 35, member E2 [Homo sap...	136.0	[0..2]	[312..338]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	135.0	[0..2]	[314..24]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	132.0	[0..9]	[310..283]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	131.0	[0..1]	[314..131]
gi\|92872427, gi\|... - gi\|92872427\|gb\|ABE81054.1\| Protein of unknown function DUF6, transmembrane [Medicago truncatula], gi...	130.0	[0..5]	[312..17]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	130.0	[0..15]	[303..420]
gi\|114605867 - gi\|114605867\|ref\|XP_518230.2\| PREDICTED: solute carrier family 35, member B3 [Pan troglodytes]	129.0	[0..4]	[308..275]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASALSFIF GGCCSNAYAL EALVREFPSS GILITFSQFI LITIEGLIYF LLNDVQSLKH  60
   61 PKVPRKRWFV VVVMFFAINV LNNVALGFDI SVPVHIILRS SGPLTTMAVG RILAGKRYSS 120
  121 LQIGSVFILT IGVIIATLGN AKDLHLH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VESMTRFGIG FTILVITQIL GAIMGLVLEN TYRIYGSDWR ESLFYTHALS LPFFLFLLRP  60
   61 IRSQW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [213-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDLFAIHTKG FLNLPSGVWY LCFNTLAQYF CVRGVNALGA ETSALTVSVV LNVRKFVSLC  60
   61 LSLILFENEM GPAVKFGALL VFGSSAVYAS ARSKPKTNGL KKND

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.77
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits