YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1734.09
Organism:	Schizosaccharomyces pombe
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1734.09.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	152.0	[0..2]	[313..321]
gi\|109470339 - gi\|109470339\|ref\|XP_001078382.1\| PREDICTED: similar to GDP-fucose transporter 1 isoform 1 [Rattus no...	138.0	[0..2]	[312..358]
gi\|113402542 - gi\|113402542\|ref\|XP_001128065.1\| PREDICTED: similar to solute carrier family 35, member E2 [Homo sap...	136.0	[0..2]	[312..338]
gi\|213624292, gi... - gi\|62858489\|ref\|NP_001016384.1\| solute carrier family 35, member E1 [Xenopus (Silurana) tropicalis],...	135.0	[0..2]	[314..24]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	132.0	[0..9]	[310..283]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	131.0	[0..1]	[314..131]
gi\|92872427, gi\|... - gi\|92872427\|gb\|ABE81054.1\| Protein of unknown function DUF6, transmembrane [Medicago truncatula], gi...	130.0	[0..5]	[312..17]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	130.0	[0..15]	[303..420]
gi\|114605867 - gi\|114605867\|ref\|XP_518230.2\| PREDICTED: solute carrier family 35, member B3 [Pan troglodytes]	129.0	[0..4]	[308..275]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASALSFIF GGCCSNAYAL EALVREFPSS GILITFSQFI LITIEGLIYF LLNDVQSLKH  60
   61 PKVPRKRWFV VVVMFFAINV LNNVALGFDI SVPVHIILRS SGPLTTMAVG RILAGKRYSS 120
  121 LQIGSVFILT IGVIIATLGN AKDLHLH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VESMTRFGIG FTILVITQIL GAIMGLVLEN TYRIYGSDWR ESLFYTHALS LPFFLFLLRP  60
   61 IRSQW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [213-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDLFAIHTKG FLNLPSGVWY LCFNTLAQYF CVRGVNALGA ETSALTVSVV LNVRKFVSLC  60
   61 LSLILFENEM GPAVKFGALL VFGSSAVYAS ARSKPKTNGL KKND

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.77
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits