YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC365.09c
Organism:	Schizosaccharomyces pombe
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC365.09c.

Description	E-value	Query Range	Subject Range
KIN17_MOUSE - DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=1 SV=1	388.0	[0..1]	[298..1]
gi\|149021017, gi... - ref\|XP_341555.1\| similar to Kin protein [Rattus norvegicus], gi\|157817336\|ref\|NP_001102999.1\| antige...	382.0	[0..1]	[292..1]
KIN - KIN, antigenic determinant of recA protein homolog (mouse) gi\|114629282 - gi\|114629282\|ref\|XP_001148768.1\| PREDICTED: HsKin17 protein isoform 1 [Pan troglodytes]	366.0	[0..1]	[304..1]
gi\|109088173 - gi\|109088173\|ref\|XP_001107965.1\| PREDICTED: similar to HsKin17 protein isoform 2 [Macaca mulatta]	366.0	[0..1]	[304..1]
gi\|114629284 - gi\|114629284\|ref\|XP_507648.2\| PREDICTED: HsKin17 protein isoform 2 [Pan troglodytes]	360.0	[0..1]	[304..1]
gi\|50731537 - gi\|50731537\|ref\|XP_417297.1\| PREDICTED: similar to HsKin17 protein; antigenic determinant of recA pr...	360.0	[0..1]	[304..1]
gi\|55962358 - gi\|55962358\|emb\|CAI11855.1\| KIN, antigenic determinant of recA protein homolog (mouse) [Danio rerio]	358.0	[0..1]	[293..1]
gi\|73949092 - gi\|73949092\|ref\|XP_535194.2\| PREDICTED: similar to HsKin17 protein isoform 1 [Canis familiaris]	357.0	[0..1]	[304..1]
CE20297 - status:Partially_confirmed UniProt:Q9XWF2 protein_id:CAA21720.1	357.0	[0..1]	[293..1]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAEAGTPK AISNALKSKG LQRLRWYCSA CQKQMRDENG FKCHTQSEGH IRQMNVIAMN  60
   61 PGKRIQDFSN QFLRDFISLL RTAHGEKKIH FNQFYQEYIR DKNHVHMNAT RWHTLSEFCK 120
  121 FLGRQGMCRV EENEKGFFIS YIDKNPANIL RNEANKKRER QEKSDEEQRL RLLDEQIKRA 180
  181 YESAQNNEDN KDGSSREQPV LHEIDLSKKG NPIQLNLSSS SDSHSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [227-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNEFFQTRNT PTFSFSSSSS QTSLKHKPKN VFAELNKSRK KNNKDSLDQG QNVKRPRSAV  60
   61 EDIIAQETMR EKRRNIKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits