YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC613.07
Organism:	Schizosaccharomyces pombe
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC613.07.

Description	E-value	Query Range	Subject Range
gi\|114557502 - gi\|114557502\|ref\|XP_001142619.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	310.0	[0..5]	[263..216]
gi\|167773811 - gi\|167773811\|gb\|ABZ92340.1\| chromosome 1 open reading frame 181 [synthetic construct] ZNHIT6 - zinc finger, HIT type 6	309.0	[0..5]	[263..216]
gi\|109009546 - gi\|109009546\|ref\|XP_001109136.1\| PREDICTED: similar to CG1463-PA [Macaca mulatta]	308.0	[0..5]	[263..216]
gi\|149026161, gi... - gi\|62644529\|ref\|XP_217694.3\| PREDICTED: similar to CG1463-PA [Rattus norvegicus], gi\|171847405\|gb\|AA...	307.0	[0..5]	[263..207]
gi\|73960105 - gi\|73960105\|ref\|XP_537090.2\| PREDICTED: similar to CG1463-PA [Canis familiaris]	306.0	[0..5]	[263..214]
CA181_PONPY - HIT-type zinc finger-containing protein C1orf181 homolog - Pongo pygmaeus (Orangutan) BCD1_PONAB - Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1	306.0	[0..5]	[263..211]
BCD1_MOUSE - Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=1 SV=2	304.0	[0..5]	[263..207]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENRLGICS TCQKNASKYR CPRCDSRFCC LECNLEHKRL TKCSGERDPA TFV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [54-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSKLVNHLN SDFNFLSGVE RLINRKENGS HQVSNRAERN RLQLKRSLER AGINIKFAPP  60
   61 SNKKRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [120-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNRTHYDKKS HLIKWSIEWC LHESSTSKDL TDEASENTII THSHPESEPL EKIFRKLVEE  60
   61 NSEMNSQVSK ANIHAPDDMQ FMIKSRKSRS KGFIYKKIEP SNSLSSCLRN SFVFEVPTIH 120
  121 VFTSTTQVHT ESSYE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [255-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSSEQSDDS SSSSSCISDS EESSSDDELN ELSNEKKANS PTQNVDTSSK LSSVKFQNED  60
   61 DEDRRKNSDG SEASYSLPPL FGSYFQKQGQ Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits