YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.18c
Organism:	Schizosaccharomyces pombe
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.18c.

Description	E-value	Query Range	Subject Range
gi\|125591841, gi... - gi\|50929141\|ref\|XP_474098.1\| OSJNBa0033G05.21 [Oryza sativa (japonica cultivar-group)], gi\|38344897\|... gi\|90399099, gi\|... - gi\|90399099\|emb\|CAJ86159.1\| H0413E07.12 [Oryza sativa (indica cultivar-group)], gi\|125549964\|gb\|EAY9...	186.0	[0..1]	[249..256]
gi\|15220525, gi\|... - gi\|8778718\|gb\|AAF79726.1\|AC005106_7 T25N20.15 [Arabidopsis thaliana], gi\|15220525\|ref\|NP_172041.1\| C...	176.0	[0..1]	[249..224]
gi\|92881657 - gi\|92881657\|gb\|ABE86343.1\| C2 [Medicago truncatula]	174.0	[0..1]	[249..256]
gi\|47216891 - gi\|47216891\|emb\|CAG02063.1\| unnamed protein product [Tetraodon nigroviridis]	172.0	[0..1]	[214..81]
SYT1_PONAB - Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1 SYT1_PONPY - Synaptotagmin-1 - Pongo pygmaeus (Orangutan)	171.0	[0..1]	[214..147]

Back

Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNPLGTLV VRIWKAKNLP NKALVGKQSP YCVCRVGEVV KRTQTDKRSG QEPSWNAVLE  60
   61 FNIPSESYHI MKITVFHEGF RKHPHLIGDT VLSFEKAMKE ELQSEWYELK NEFQFAGELS 120
  121 VQFKFIPTDP LYFDRASSKP VLQFPYSSVA ALTPVPKKPS KPSKPRKKVP VSHPLPPTPP 180
  181 SREEHVSVPR ESSLFTYEDD PLPSFPSPYM VDDYYTQDVF VSDNVNDYSY GVQNPTNPRL 240
  241 SVEDYDANHS SLPPVPPPHL ILPTASSSQI FH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1dqvA
Description:	Synaptogamin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits