YRC Public Data Repository - Protein Structure Prediction

Protein:	oma1
Organism:	Schizosaccharomyces pombe
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oma1.

Description	E-value	Query Range	Subject Range
gi\|75700080, gi\|... - gi\|75906355\|ref\|YP_320651.1\| peptidase M48, Ste24p [Anabaena variabilis ATCC 29413], gi\|75700080\|gb\|...	215.0	[0..2]	[336..189]
gi\|22299177, gi\|... - gi\|22299177\|ref\|NP_682424.1\| hypothetical protein tll1634 [Thermosynechococcus elongatus BP-1], gi\|2...	212.0	[0..3]	[333..238]
gi\|67924411, gi\|... - gi\|67924411\|ref\|ZP_00517839.1\| Peptidase M48, Ste24p [Crocosphaera watsonii WH 8501], gi\|67853746\|gb...	209.0	[0..2]	[335..277]
gi\|38111064, gi\|... - gi\|39971473\|ref\|XP_367127.1\| hypothetical protein MG07052.4 [Magnaporthe grisea 70-15], gb\|EAA56697....	206.0	[0..3]	[334..14]
gi\|71675112, gi\|... - gi\|71675112\|ref\|ZP_00672858.1\| Peptidase M48, Ste24p [Trichodesmium erythraeum IMS101], gi\|71672088\|...	204.0	[0..2]	[334..213]
gi\|78355154, gi\|... - gi\|78355154\|ref\|YP_386603.1\| putative lipoprotein [Desulfovibrio desulfuricans subsp. desulfuricans ...	204.0	[0..62]	[319..2]
gi\|78193707, gi\|... - gi\|78222452\|ref\|YP_384199.1\| peptidase M48, Ste24p [Geobacter metallireducens GS-15], gi\|78193707\|gb...	202.0	[0..54]	[333..3]
gi\|39996537, gi\|... - gi\|39996537\|ref\|NP_952488.1\| M48 family peptidase [Geobacter sulfurreducens PCA], gi\|39983418\|gb\|AAR...	202.0	[0..64]	[323..1]
gi\|67522787, gi\|... - gi\|67522787\|ref\|XP_659454.1\| hypothetical protein AN1850.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	200.0	[0..37]	[321..85]
gi\|28923201, gi\|... - gi\|7635747\|emb\|CAB88499.1\| conserved hypothetical protein [Neurospora crassa], gi\|32412107\|ref\|XP_32... gi\|85104047 - gi\|85104047\|ref\|XP_961653.1\| hypothetical protein	198.0	[0..7]	[334..100]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNKYISNY SRTRAVSCAP VLSYKKCSYR NFNGLLQARF QSNNLSWSNR NRVVYKSFQP  60
   61 NPRDKRFQWI FGALIAGGGV YYFTHLEYVP ISNRRRFNDV SLDFEKRMAQ DAYKEVMSEY 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRMLPSYHPT TLYVSRVLKR IIAVSGMSDL KWELHVIRDP TPNAFVLPGG KVFVFEGILP  60
   61 MCKGEDGLAA VLAHETAHQV ARHSAEKIAF TRAVSCIVFL AAASLDLSGQ LSHFLLNFGL 120
  121 LLPFSRKMET EADYIGLMLM SQACFDPNAA KTLWERMDAA EGQMGKALAF ASTHPSSKKR 180
  181 IRKIEEWLPE AQVKRETSDC YHETWPMLQS FKEVHW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	1npcA
Description:	THE STRUCTURE OF NEUTRAL PROTEASE FROM BACILLUS CEREUS AT 0.2-NM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits