YRC Public Data Repository - Protein Structure Prediction

Protein:	oma1
Organism:	Schizosaccharomyces pombe
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oma1.

Description	E-value	Query Range	Subject Range
gi\|75700080, gi\|... - gi\|75906355\|ref\|YP_320651.1\| peptidase M48, Ste24p [Anabaena variabilis ATCC 29413], gi\|75700080\|gb\|...	215.0	[0..2]	[336..189]
gi\|22299177, gi\|... - gi\|22299177\|ref\|NP_682424.1\| hypothetical protein tll1634 [Thermosynechococcus elongatus BP-1], gi\|2...	212.0	[0..3]	[333..238]
gi\|67924411, gi\|... - gi\|67924411\|ref\|ZP_00517839.1\| Peptidase M48, Ste24p [Crocosphaera watsonii WH 8501], gi\|67853746\|gb...	209.0	[0..2]	[335..277]
gi\|38111064, gi\|... - gi\|39971473\|ref\|XP_367127.1\| hypothetical protein MG07052.4 [Magnaporthe grisea 70-15], gb\|EAA56697....	206.0	[0..3]	[334..14]
gi\|71675112, gi\|... - gi\|71675112\|ref\|ZP_00672858.1\| Peptidase M48, Ste24p [Trichodesmium erythraeum IMS101], gi\|71672088\|...	204.0	[0..2]	[334..213]
gi\|78355154, gi\|... - gi\|78355154\|ref\|YP_386603.1\| putative lipoprotein [Desulfovibrio desulfuricans subsp. desulfuricans ...	204.0	[0..62]	[319..2]
gi\|78193707, gi\|... - gi\|78222452\|ref\|YP_384199.1\| peptidase M48, Ste24p [Geobacter metallireducens GS-15], gi\|78193707\|gb...	202.0	[0..54]	[333..3]
gi\|39996537, gi\|... - gi\|39996537\|ref\|NP_952488.1\| M48 family peptidase [Geobacter sulfurreducens PCA], gi\|39983418\|gb\|AAR...	202.0	[0..64]	[323..1]
gi\|67522787, gi\|... - gi\|67522787\|ref\|XP_659454.1\| hypothetical protein AN1850.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	200.0	[0..37]	[321..85]
gi\|28923201, gi\|... - gi\|7635747\|emb\|CAB88499.1\| conserved hypothetical protein [Neurospora crassa], gi\|32412107\|ref\|XP_32... gi\|85104047 - gi\|85104047\|ref\|XP_961653.1\| hypothetical protein	198.0	[0..7]	[334..100]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNKYISNY SRTRAVSCAP VLSYKKCSYR NFNGLLQARF QSNNLSWSNR NRVVYKSFQP  60
   61 NPRDKRFQWI FGALIAGGGV YYFTHLEYVP ISNRRRFNDV SLDFEKRMAQ DAYKEVMSEY 120
  121 G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRMLPSYHPT TLYVSRVLKR IIAVSGMSDL KWELHVIRDP TPNAFVLPGG KVFVFEGILP  60
   61 MCKGEDGLAA VLAHETAHQV ARHSAEKIAF TRAVSCIVFL AAASLDLSGQ LSHFLLNFGL 120
  121 LLPFSRKMET EADYIGLMLM SQACFDPNAA KTLWERMDAA EGQMGKALAF ASTHPSSKKR 180
  181 IRKIEEWLPE AQVKRETSDC YHETWPMLQS FKEVHW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	1npcA
Description:	THE STRUCTURE OF NEUTRAL PROTEASE FROM BACILLUS CEREUS AT 0.2-NM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits