| Protein: | jmj2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 715 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jmj2.
| Description | E-value | Query Range |
Subject Range |
|
|
661.0 | [0..47] | [713..1] |
|
|
660.0 | [0..51] | [713..5] |
|
|
660.0 | [0..47] | [713..1] |
|
|
659.0 | [0..51] | [713..5] |
|
|
659.0 | [0..47] | [713..1] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MSKSTFHQTS PSFVQYTHAT DKLKPAPHGM NTRGNNLSSM SKNTGQRKQR SKSIHGLPVA 60
61 PVFYPDKEEF QDSIGYINKI APIGEKYGII KIVPPAGWNP PMQLDM
|
| Detection Method: |  |
| Confidence: | 3.61 |
| Match: | 2oq6A |
| Description: | No description for 2oq6A was found. |
|
Region A: Residues: [107-257] |
1 11 21 31 41 51
| | | | | |
1 NKFSFRTRRQ DLHMMDLRFR EIVSYDERVY RFFCNLGMEL PESFFISNTS IDLYSLMRCI 60
61 DSHASLSEKE LKVHVWKRIL RELSIPFTNA SLKEASDLYL RYIFPFEDFV RKYQTSEDQC 120
121 FETDLFPKFF TKDEHSNISI KDQKTSKQFN P
|
| Detection Method: | |
| Confidence: | 23.522879 |
| Match: | 1kqqA |
| Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [258-335] |
1 11 21 31 41 51
| | | | | |
1 ETNESVGILQ NQESKRNEQI KQQYMPADNF GSNDNHSHNK KRRLSSLSTN NNHLCDNCHK 60
61 PVNCEVEDTC KEAYCTKC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [336-612] |
1 11 21 31 41 51
| | | | | |
1 IINPYEFGFE TGNYYTLSNF EKYCDNFKKN YFSKFKDSEI TEDIVEKEYW KLVKDNNTSL 60
61 EVEYGADLST LDQGSAFPSL AKNPVNPYSK DTWNLNVIAS TNGSLLSYID NPVSGITCPW 120
121 LYVGMCFSTF CWHVEDNYTY SVNYQHYGDT KLWYGIPGDQ AERFERAALD IAPDLVKKQK 180
181 DLLYQLATMI NPDELQKRGV DVYFIDQGPN EFVITFPKSF HAGINHGFNI NEAVNFAPKD 240
241 WLLNGFSLNG VLKYQSLLKP PVLSHDMLVY NLATNPA
|
| Detection Method: | |
| Confidence: | 66.69897 |
| Match: | 2oq6A |
| Description: | No description for 2oq6A was found. |
|
Region A: Residues: [613-715] |
1 11 21 31 41 51
| | | | | |
1 SEISVSELRP WVHEAVKREL GIRIMIRGRY DLKEILYREL MEDAENWQCQ HCKAFSYFSQ 60
61 VACSCKSITV CPLHIEYLCK CDLSNKTLRL KVDDNELQKL LSY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.662 | 0.967 | nuclear chromatin | a.4.1 | Homeodomain-like |
