YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC23G7.10c
Organism:	Schizosaccharomyces pombe
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC23G7.10c.

Description	E-value	Query Range	Subject Range
gi\|46108728, gi\|... - gi\|46108728\|ref\|XP_381422.1\| hypothetical protein FG01246.1 [Gibberella zeae PH-1], gi\|42545264\|gb\|E...	385.0	[0..3]	[387..5]
gi\|145021478, gi... - gi\|39945174\|ref\|XP_362124.1\| hypothetical protein MGG_04569 [Magnaporthe grisea 70-15], gb\|EAA50810....	368.0	[0..5]	[390..9]
gi\|59802838 - gi\|59802838\|gb\|AAX07634.1\| NADH-dependent flavin oxidoreductase-like protein [Magnaporthe grisea]	368.0	[0..5]	[390..9]
gi\|116222977, gi... - gi\|67927612\|ref\|ZP_00520804.1\| NADH:flavin oxidoreductase/NADH oxidase [Solibacter usitatus Ellin607...	365.0	[0..33]	[388..29]
gi\|85114101 - gi\|85114101\|ref\|XP_964639.1\| NADPH dehydrogenase [Neurospora crassa OR74A] gi\|28926428, gi\|... - gi\|32414517\|ref\|XP_327738.1\| hypothetical protein [Neurospora crassa], gi\|28926428\|gb\|EAA35403.1\| NA...	361.0	[0..4]	[395..10]
gi\|20808521, gi\|... - gi\|20808521\|ref\|NP_623692.1\| NADH:flavin oxidoreductase [Thermoanaerobacter tengcongensis MB4], gi\|2... gi\|20808521 - gi\|20808521\|ref\|NP_623692.1\| NADH:flavin oxidoreductase, Old Yellow Enzyme family [Thermoanaerobacte...	359.0	[0..29]	[391..5]
gi\|25029433, gi\|... - gi\|25029433\|ref\|NP_739487.1\| putative NADH-dependent flavin oxidoreductase [Corynebacterium efficien...	358.0	[0..16]	[388..3]
gi\|46135153, gi\|... - gi\|75910632\|ref\|YP_324928.1\| flavin oxidoreductase/NADH oxidase [Anabaena variabilis ATCC 29413], gi...	356.0	[0..30]	[389..1]
gi\|146298926, gi... - gi\|90588376\|ref\|ZP_01244028.1\| NADH:flavin oxidoreductase/NADH oxidase [Flavobacterium johnsoniae UW...	356.0	[0..31]	[387..3]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIVNEGAEN VGYFTPAQKI PAGAAIGVPQ TKLFTPLKIR GVEFHNRMFV SPMCTYSADQ  60
   61 EGHLTDFHLV HLGAMGMRGP GLVMVEATAV SPEGRISPND SGLWMESQMK PLRRIVEFAH 120
  121 SQNQKIGIQL AHAGRKASTT APYRGYTVAT EAQGGWENDV YGPNEDRWDE NHAQPHKLTE 180
  181 KQYDELVDKF VVAAKRAVEI GFDVIEIHGA HGYLISSTVS PATNDRNDKY GGTFEKRILF 240
  241 PMEVVHSVRK AIPDSMPLFY RVTATDWLPK GQGWEIEDTV ALAARLRDGG VDLIDVSSGG 300
  301 NHKDQRIEVK DCYQVPFAEK IKDQVNGILL GAVGMIRDGL TANEILESGK ADVTFVAREF 360
  361 LRNPSLVLDS ANQLGENVAW PVQYDYAVKG HRKLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.09691
Match:	1z41A
Description:	Crystal structure of oxidized YqjM from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.94749091175302	bayes_pls_golite062009
binding	1.2785695107981	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.688760510551923	bayes_pls_golite062009
nucleic acid binding	0.399944118589576	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: