YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1259.07
Organism:	Schizosaccharomyces pombe
Length:	351 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1259.07.

Description	E-value	Query Range	Subject Range
gi\|10178287 - gi\|10178287\|emb\|CAC08345.1\| putative protein [Arabidopsis thaliana]	256.0	[0..1]	[337..409]
gi\|115472061, gi... - gi\|115472061\|ref\|NP_001059629.1\| Os07g0477500 [Oryza sativa (japonica cultivar-group)], gi\|113611165...	234.0	[0..2]	[337..279]
GERIA_BACCE - Spore germination protein GerIA OS=Bacillus cereus GN=gerIA PE=3 SV=1 gi\|229193019, gi... - gi\|229193019\|ref\|ZP_04319975.1\| Spore germination protein gerIA [Bacillus cereus ATCC 10876], gi\|228...	191.0	[0..3]	[220..23]
gi\|49097914, gi\|... - gi\|67540220\|ref\|XP_663884.1\| hypothetical protein AN6280.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	176.0	[0..146]	[316..791]
gi\|42546461, gi\|... - gi\|46137773\|ref\|XP_390578.1\| hypothetical protein FG10402.1 [Gibberella zeae PH-1], gi\|42546461\|gb\|E...	176.0	[0..154]	[316..857]
gi\|114196262, gi... - gi\|115384046\|ref\|XP_001208570.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114196262\|gb\|EA...	174.0	[0..146]	[316..754]
gi\|66853222, gi\|... - gi\|71001806\|ref\|XP_755584.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668532...	171.0	[0..145]	[316..771]
gi\|151941926 - gi\|151941926\|gb\|EDN60282.1\| conserved protein [Saccharomyces cerevisiae YJM789] RXT3 - Subunit of the RPD3L complex; involved in histone deacetylation gi\|207346979 - gi\|207346979\|gb\|EDZ73308.1\| YDL076Cp-like protein [Saccharomyces cerevisiae AWRI1631] RXT3_YEAST - Transcriptional regulatory protein RXT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|190405083 - gi\|190405083\|gb\|EDV08350.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	170.0	[0..115]	[317..28]
gi\|169774787 - gi\|169774787\|ref\|XP_001821861.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769724 - gi\|83769724\|dbj\|BAE59859.1\| unnamed protein product [Aspergillus oryzae]	165.0	[0..146]	[316..28]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKTPENEQ SKKTFDPKDS MKIEETSTNG SSQPSQPSNI KLSIGSILES SNDNGDPEYS  60
   61 ENGMGNMNMN TLPMATSTPM SYTKQPSEAK YPNSVWERKG VSDQEENTSS VKRQKTLPTQ 120
  121 SSGEEEAKYS HPGAPTATSA DSISMESRPS NLSTSLSKTT SYPQFQVRQF VSPIISIDNS 180
  181 ALEPFLNRYP ASE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [194-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLFPVTEYEY TPWLEFPLLY SSIGKFVRVT IDIKWLNAAI NPRLCRREIW GTDVYTDDSD  60
   61 IATILAHCGC FSLLKPVRKI AVVDLYILPP LVHYKGTRKN QIESRSWSSR QDGISLKIKE 120
  121 VTWKPACASI FENSIHTLTL EERLQARLEL SRSSTFKI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.42
Match:	1jbiA
Description:	Cochlin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits