YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC3B9.05
Organism:	Schizosaccharomyces pombe
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3B9.05.

Description	E-value	Query Range	Subject Range
gi\|46135893, gi\|... - gi\|46135893\|ref\|XP_389638.1\| hypothetical protein FG09462.1 [Gibberella zeae PH-1], gi\|42553507\|gb\|E...	135.0	[0..2]	[112..582]
gi\|32406919, gi\|... - gi\|32406919\|ref\|XP_324070.1\| hypothetical protein [Neurospora crassa], gi\|28921728\|gb\|EAA31008.1\| co... gi\|85096352 - gi\|85096352\|ref\|XP_960244.1\| hypothetical protein NCU04713 [Neurospora crassa OR74A]	133.0	[0..2]	[110..624]
gi\|145013884, gi... - gi\|39968817\|ref\|XP_365799.1\| hypothetical protein MGG_02501 [Magnaporthe grisea 70-15], gb\|EAA54516....	127.0	[0..2]	[108..590]
gi\|46227979 - gi\|46227979\|gb\|EAK88899.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Crypto... gi\|66358710 - gi\|66358710\|ref\|XP_626533.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Cryp...	123.0	[0..2]	[111..632]
gi\|67622075 - gi\|67622075\|ref\|XP_667794.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54658962 - gi\|54658962\|gb\|EAL37567.1\| hypothetical protein Chro.20367 [Cryptosporidium hominis]	123.0	[0..2]	[111..620]
YNS9_SCHPO - Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H1... SPBC18H10.09 - zinc finger protein, zf-CHY type	122.0	[0..2]	[108..329]
gi\|49070348, gi\|... - gi\|71006658\|ref\|XP_757995.1\| hypothetical protein UM01848.1 [Ustilago maydis 521], ref\|XP_399463.1\| ...	117.0	[0..1]	[110..25]
gi\|115665260, gi... - gi\|115969353\|ref\|XP_001196520.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	116.0	[0..2]	[114..1192]
gi\|169769903 - gi\|169769903\|ref\|XP_001819421.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767280 - gi\|83767280\|dbj\|BAE57419.1\| unnamed protein product [Aspergillus oryzae]	113.0	[0..2]	[108..48]
gi\|49648541, gi\|... - gi\|50550401\|ref\|XP_502673.1\| YALI0D10857p [Yarrowia lipolytica], gi\|49648541\|emb\|CAG80861.1\| unnamed... gi\|49648541 - gi\|49648541\|emb\|CAG80861.1\| YALI0D10857p [Yarrowia lipolytica]	113.0	[0..2]	[108..694]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCKHVLNAQV SIRTACCRRW IDCIECHNEI ADHPLLKTSE LTLICKKCRK AFRIQFDQTM  60
   61 DESDEYCPNC DNHFVIDAIT KVEKPKAPIS PKLDLRMLNQ EEKELEELLD ETTRLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2dktA
Description:	No description for 2dktA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits