YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC211.08c
Organism:	Schizosaccharomyces pombe
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC211.08c.

Description	E-value	Query Range	Subject Range
PNP_CARHZ - Polyribonucleotide nucleotidyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...	270.0	[0..7]	[256..307]
PNP_PELUB - Polyribonucleotide nucleotidyltransferase OS=Pelagibacter ubique GN=pnp PE=3 SV=1 PNP_PELUB - Polyribonucleotide nucleotidyltransferase OS=Pelagibacter ubique (strain HTCC1062) GN=pnp PE=3 SV=1	268.0	[0..8]	[256..295]
gi\|91718278, gi\|... - gi\|91762476\|ref\|ZP_01264441.1\| polyribonucleotide nucleotidyltransferase [Candidatus Pelagibacter ub...	267.0	[0..8]	[256..295]
PNP_RALSO - Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum GN=pnp PE=3 SV=1 PNP_RALSO - Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum (strain GMI1000) GN=pnp PE=3 SV=...	266.0	[0..7]	[256..296]
gi\|83727042, gi\|... - gi\|83746292\|ref\|ZP_00943345.1\| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum UW5...	263.0	[0..7]	[255..296]
PNP_GEOSL - Polyribonucleotide nucleotidyltransferase OS=Geobacter sulfurreducens GN=pnp PE=3 SV=1 PNP_GEOSL - Polyribonucleotide nucleotidyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	262.0	[0..8]	[256..295]
PNP_BORA1 - Polyribonucleotide nucleotidyltransferase OS=Bordetella avium (strain 197N) GN=pnp PE=3 SV=1	262.0	[0..7]	[255..301]
gi\|254181191, gi... - gi\|99909798\|ref\|ZP_01316909.1\| hypothetical protein Bpse1_03003728 [Burkholderia pseudomallei 1655],...	262.0	[0..7]	[256..303]
gi\|167918256 - gi\|167918256\|ref\|ZP_02505347.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|217419798, gi... - gi\|217419798\|ref\|ZP_03451304.1\| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei... PNP_BURPS - Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain K96243) GN=pnp PE=3 S... PNP_BURP1 - Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=pnp PE=3 SV... gi\|167815032 - gi\|167815032\|ref\|ZP_02446712.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|100061234, gi... - gi\|67754596\|ref\|ZP_00493502.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph... gi\|167823448 - gi\|167823448\|ref\|ZP_02454919.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|167718839 - gi\|167718839\|ref\|ZP_02402075.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|167737848 - gi\|167737848\|ref\|ZP_02410622.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|167901988 - gi\|167901988\|ref\|ZP_02489193.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|167910223 - gi\|167910223\|ref\|ZP_02497314.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|167845000 - gi\|167845000\|ref\|ZP_02470508.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... gi\|134244712, gi... - gi\|134283923\|ref\|ZP_01770619.1\| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei... gi\|167893541 - gi\|167893541\|ref\|ZP_02480943.1\| polynucleotide phosphorylase/polyadenylase [Burkholderia pseudomalle... PNP_BURP6 - Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 668) GN=pnp PE=3 SV=1 PNP_BURP0 - Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=pnp PE=3 SV... gi\|254258157, gi... - gi\|67683891\|ref\|ZP_00477931.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph... gi\|226195372, gi... - gi\|226195372\|ref\|ZP_03790961.1\| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomallei... gi\|242315054, gi... - gi\|82535997\|ref\|ZP_00895007.1\| hypothetical protein Bpse110_02002696 [Burkholderia pseudomallei 1106... PNP_BURPS - Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei GN=pnp PE=3 SV=1 gi\|237503430, gi... - gi\|237811578\|ref\|YP_002896029.1\| polyribonucleotide nucleotidyltransferase [Burkholderia pseudomalle...	262.0	[0..7]	[256..303]
gi\|254202114, gi... - gi\|83620240\|ref\|ZP_00930662.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph... gi\|194316464, gi... - gi\|254175718\|ref\|ZP_04882378.1\| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC ... gi\|194527328, gi... - gi\|83623824\|ref\|ZP_00934085.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph... gi\|238523292, gi... - gi\|67642196\|ref\|ZP_00440956.1\| polyribonucleotide nucleotidyltransferase (Polynucleotidephosphorylas... PNP_BURM7 - Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=pnp PE=3 SV=... PNP_BURM9 - Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=pnp PE=3 SV=... gi\|167000372, gi... - gi\|243063706\|gb\|EES45892.1\| polyribonucleotide nucleotidyltransferase [Burkholderia mallei PRL-20], ... PNP_BURMA - Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain ATCC 23344) GN=pnp PE=3 SV=... PNP_BURMS - Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain SAVP1) GN=pnp PE=3 SV=1 gi\|85065184 - gi\|85065184\|ref\|ZP_01026037.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph... PNP_BURMA - Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei GN=pnp PE=3 SV=1 gi\|87314816, gi\|... - gi\|87314816\|ref\|ZP_01095854.1\| COG1185: Polyribonucleotide nucleotidyltransferase (polynucleotide ph...	262.0	[0..7]	[256..303]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRKRVYGP SVSVPPYFEE PEQPVFTRTR DVDRCRKIYL KLGWATKAVG SSYFESEKIK  60
   61 IACTVSGPRP SKTFAFRSSA KLNCEFRLSP FSTSVRQGHV QTVEEKSYSQ MIEAAISPSI 120
  121 LLHLYPKSSI DVYIQVIESD GALATLAAAI SCASSAIADA NIDCIDLVTG SSVLFNPNTD 180
  181 EYWIDPDYVD ERARAAKGSV VMGYMASLGH VTQVWERGTC SPSRLSFLTE KCIKNAKDTR 240
  241 LVINHALLLE KSKSEDP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	2ba0F
Description:	Archaeal exosome core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits