YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1A6.03c
Organism:	Schizosaccharomyces pombe
Length:	624 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1A6.03c.

Description	E-value	Query Range	Subject Range
SPAC977.09c, SPB... - phospholipase, phospholipase PLB4_SCHPO - Putative lysophospholipase C977.09c/C1348.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)...	784.0	[0..7]	[599..46]
PLB1_TORDE - Lysophospholipase OS=Torulaspora delbrueckii PE=1 SV=1	756.0	[0..27]	[620..23]
PLB1_CANGA - Lysophospholipase 1 OS=Candida glabrata GN=PLB1 PE=3 SV=2 PLB1_CANGA - Lysophospholipase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-...	751.0	[0..27]	[602..24]
PLB1_ASPFC - Lysophospholipase 1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plb1 PE=1 SV... PLB1_ASPFU - Lysophospholipase 1 OS=Aspergillus fumigatus GN=plb1 PE=2 SV=1 PLB1_ASPFU - Lysophospholipase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)...	748.0	[0..22]	[613..31]
gi\|36244728 - gi\|36244728\|gb\|AAQ85123.1\| lysophospholipase [Aspergillus fumigatus]	746.0	[0..8]	[615..9]
gi\|190407331 - gi\|190407331\|gb\|EDV10598.1\| phospholipase B [Saccharomyces cerevisiae RM11-1a] PLB3_YEAST - Lysophospholipase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PLB3 PE=1 SV=1 PLB3 - Phospholipase B (lysophospholipase) involved in phospholipid metabolism; hydrolyzes phosphatidylinos...	746.0	[0..27]	[600..28]
gi\|20258069 - gi\|20258069\|gb\|AAM16160.1\| phospholipase B [Candida glabrata]	741.0	[0..27]	[602..24]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGMHDTPL SLMQKREALA ISLSKRDSVG SYAPYNVTCP SDYMLRPASD GISSGEQSFI  60
   61 DKRIPKINTQ MRSFISNTGL DVDVNSVIND SDGPRLGLAF SGGGLRAMVH GGGVLNAFDS 120
  121 RNGNGSSLAG ILQSAMYIAG LSGGSWLVGS VAVNNFANIT YLRDNVWNLE HSVFAPHGDN 180
  181 VVENLAYYDD LDDEIDQKKD AGFDTSLTDL WGRALSRKLV DATQGGPNIT FSSIRNQTWF 240
  241 QNADYPYPII ISDSRLEEEK AIPANTSIFE FTPYEFGTWD NGIKAFLPME YVGTHLKNGV 300
  301 PPDHKCIRNY DNAGFVMGTS ATLFNTFLLE WSQEVTSNST LYDIIHKVFE KLSEDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.39794
Match:	1cjyA
Description:	Domain from cytosolic phospholipase A2; Cytosolic phospholipase A2 catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [357-624]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDIAPYPNPY QNFTTTNTTV KNPFERFDTI DLVDGGEDDE NIPIWPLLHP QRFVDVIFAV  60
   61 DATYDDSNGW PDGSSIVTTY ERIITYNANK SVDVRGFPYI PDEDTIISLG LNTHPTFFGC 120
  121 DGRNTTAGNH TVDNNTPPLL VYFPNYPWVY YSNISTFTMS MNDTLSSGIL ENAALSATQN 180
  181 NSDSFAVCLA CAMIQRSLER KNMSTPSQCS SCFEQYCWNG TTVNNPSAVS NYAPTVLSAS 240
  241 TTSGTSSVRA KPIVFYLFAS LLTVSLLL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.38
Match:	1cjyA
Description:	Domain from cytosolic phospholipase A2; Cytosolic phospholipase A2 catalytic domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits