YRC Public Data Repository - Protein Structure Prediction

Protein:	cid11
Organism:	Schizosaccharomyces pombe
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cid11.

Description	E-value	Query Range	Subject Range
gi\|38100945, gi\|... - gi\|86196877\|gb\|EAQ71515.1\| hypothetical protein MGCH7_ch7g922 [Magnaporthe grisea 70-15], gi\|3995683...	348.0	[0..9]	[406..386]
cid13 - poly(A) polymerase Cid13 CID13_SCHPO - Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid13 PE=1 SV...	325.0	[0..9]	[412..10]
gi\|46105240, gi\|... - gi\|46105240\|ref\|XP_380424.1\| hypothetical protein FG00248.1 [Gibberella zeae PH-1], gi\|42546815\|gb\|E...	323.0	[0..9]	[377..241]
FBpp0301888, FBp... - type=protein; loc=3R:join(18038012..18040651,18040902..18041168,18041231..18042418); ID=FBpp0301888;...	323.0	[0..21]	[447..910]
gi\|49112537, gi\|... - gi\|67901522\|ref\|XP_681017.1\| hypothetical protein AN7748.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	320.0	[0..18]	[364..4]
gi\|125810298, gi... - gi\|54636608\|gb\|EAL26011.1\| GA22075-PA [Drosophila pseudoobscura], gi\|125810298\|ref\|XP_001361433.1\| G...	313.0	[0..27]	[473..13]
gi\|90301040, gi\|... - gi\|90301040\|gb\|EAS30671.1\| hypothetical protein CIMG_06150 [Coccidioides immitis RS], gi\|119182218\|r...	301.0	[0..9]	[384..106]
gi\|83772230 - gi\|83772230\|dbj\|BAE62360.1\| unnamed protein product [Aspergillus oryzae] gi\|169778055 - gi\|169778055\|ref\|XP_001823493.1\| hypothetical protein [Aspergillus oryzae RIB40]	298.0	[0..18]	[357..4]

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Predicted Domain #1

Region A:
Residues: [1-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLTFTCCP FEGQMQQKKR RFDANLVQLQ ESEHRNDQIN ETVDAELTNE CWKLYMRLKP  60
   61 SNEEVSRRQQ FVDKLRTILS TEIKDAKLDL FVFGSTENNL AIQQSDVDVC IITNGSKYLN 120
  121 STCQLAQLLY SYGMKQIVCV SRARVPIVKI WDPQFDIHCD LNINNDVAKI NTKMLRLFVS 180
  181 IDPRVRPLGL IIKYWAKQRA LCDAAGSGTI TSYTISCMLV NFLQTRNPPI LPAMLDLMSN 240
  241 DDNKMFVDDI VGFKEKATLN KTSLGRLLID FFYYYGFSFN YLDSVVSVRS GTVLNKQEKG 300
  301 WAMEVNNSLC VEEPFNTARN LANTADNPSV KGLQSEFQRA FRLMSENNAC ERLCKICEEY 360
  361 QFLDITNEAN YGNTNTPFNT AYESFGCNHT VLPEAAAYPK PYYPPQITLS DGGNMNFLYY 420
  421 IPDESNHQSY ENKANRDSDF QGQTSLTQGS APPWHYIPCQ SWLVWYPSED ASNPASGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1f5aA
Description:	Poly(A) polymerase, middle domain; Poly(A) polymerase N-terminal, catalytic domain; Poly(A) polymerase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	0.700885882576134	bayes_pls_golite062009
transferase activity	0.506774368835282	bayes_pls_golite062009
nucleotidyltransferase activity	0.364145331143168	bayes_pls_golite062009
binding	0.127331270075375	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: