YRC Public Data Repository - Protein Structure Prediction

Protein:	tom20
Organism:	Schizosaccharomyces pombe
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tom20.

Description	E-value	Query Range	Subject Range
gi\|49085096, gi\|... - gi\|67516555\|ref\|XP_658163.1\| hypothetical protein AN0559.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	186.0	[0..1]	[147..1]
gi\|49069072, gi\|... - gi\|71005382\|ref\|XP_757357.1\| hypothetical protein UM01210.1 [Ustilago maydis 521], ref\|XP_398825.1\| ...	184.0	[0..1]	[146..1]
gi\|70992345, gi\|... - gi\|70992345\|ref\|XP_751021.1\| mitochondrial import receptor subunit (Tom20) [Aspergillus fumigatus Af... gi\|159124591 - gi\|159124591\|gb\|EDP49709.1\| mitochondrial import receptor subunit (Tom20), putative [Aspergillus fum...	183.0	[0..1]	[147..1]
gi\|83768880 - gi\|83768880\|dbj\|BAE59017.1\| unnamed protein product [Aspergillus oryzae] gi\|169773101 - gi\|169773101\|ref\|XP_001821019.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220697171, gi... - gi\|238491042\|ref\|XP_002376758.1\| mitochondrial import receptor subunit (Tom20), putative [Aspergillu...	183.0	[0..1]	[147..1]
gi\|115397237, gi... - gi\|115397237\|ref\|XP_001214210.1\| mitochondrial import receptor subunit tom-20 [Aspergillus terreus N...	180.0	[0..1]	[147..1]
gi\|111057580 - gi\|111057580\|gb\|EAT78700.1\| hypothetical protein SNOG_14075 [Phaeosphaeria nodorum SN15]	176.0	[0..1]	[146..5]
gi\|546575 - gi\|546575\|gb\|AAB30680.1\| import receptor MOM19 [Neurospora crassa]	175.0	[0..14]	[147..19]
gi\|119176107, gi... - gi\|90298965\|gb\|EAS28596.1\| hypothetical protein CIMG_09800 [Coccidioides immitis RS], gi\|119176107\|r...	175.0	[0..1]	[147..1]
TOM20_YEAST - Mitochondrial import receptor subunit TOM20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... gi\|151943359 - gi\|151943359\|gb\|EDN61672.1\| 20 kDa mitochondrial outer membrane protein import receptor [Saccharomyc... gi\|207345161 - gi\|207345161\|gb\|EDZ72071.1\| YGR082Wp-like protein [Saccharomyces cerevisiae AWRI1631] TOM20 - Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial... gi\|190406898 - gi\|190406898\|gb\|EDV10165.1\| mitochondrial import receptor subunit TOM20 [Saccharomyces cerevisiae RM...	173.0	[0..1]	[151..8]
gi\|38106696, gi\|... - gi\|39975953\|ref\|XP_369367.1\| hypothetical protein MG06097.4 [Magnaporthe grisea 70-15], gb\|EAA52969....	170.0	[0..20]	[146..24]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSVIIGSL LATAAVGYAI YFDYKRRNDP HFRKTLKRRY KKVHEAKKQE EKLATKKFDI  60
   61 TVEEALQVVA STPVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAEEKELFF MQQVARGEQL FQQQPDNIKE SAACFYSALK VYPQPVELFA IYERTVPEPI  60
   61 MNLLRAMQAK ESIPSVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1om2A
Description:	Mitochondrial import receptor subunit Tom20
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.40898729129243	bayes_pls_golite062009
macromolecule transmembrane transporter activity	3.40898729129243	bayes_pls_golite062009
protein transmembrane transporter activity	2.85488085984023	bayes_pls_golite062009
protein transporter activity	2.05250883327513	bayes_pls_golite062009
transporter activity	1.79559401386194	bayes_pls_golite062009
binding	1.66795187393523	bayes_pls_golite062009
transmembrane transporter activity	1.6303525042646	bayes_pls_golite062009
substrate-specific transporter activity	1.49267876312697	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.3436996680931	bayes_pls_golite062009
protein binding	1.10534436186662	bayes_pls_golite062009
primary active transmembrane transporter activity	1.0671316259706	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.06141451496527	bayes_pls_golite062009
active transmembrane transporter activity	1.01882616059722	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: