YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC806.02c
Organism:	Schizosaccharomyces pombe
Length:	608 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC806.02c.

Description	E-value	Query Range	Subject Range
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	429.0	[0..107]	[606..637]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	423.0	[0..79]	[607..1171]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	416.0	[0..97]	[607..1061]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	416.0	[0..37]	[608..902]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	409.0	[0..130]	[605..166]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	406.0	[0..99]	[606..624]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVQHVILV LSGKGGVGKS SVTTQLALSL HDSKVYSRPL KTGILDIDLT GPSIPRMFGK  60
   61 DAERNRIHQS SAGWVPVYTD ETKEIGLMSL GFLLTSKNDS VVWRGPKKAA MIRQFISDVS 120
  121 WGELDFLIID TPPGTGDEHL TIVESLLSET STVRDVPIDG AVIVTTPQGI ATLDVQKEID 180
  181 FCKKASIKIL GIVENMSGYI CPHCADCTNI FSSGGGLTLS EKYKLPFLGS VPIDPKFGEM 240
  241 IENLTPDSNI VHLYSKTEMS KKFSFITNEF LNQLYG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.26
Match:	2ph1A
Description:	No description for 2ph1A was found.

Predicted Domain #2

Region A:
Residues: [277-608]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRKLDTITTI SGHTGRLWSV AAHPMLPLFA TSSQDKSVRI YNSNTYNLVH VIDGFHTRSI  60
   61 RRVAWRPIER PVLAVASFDS VVSINEKIDD DWECTAALEG HENEVKCIAW SCNGNYLATC 120
  121 SRDKSVWIWE ATEDDEFDCL AVLQEHTQDV KVVTWHPTED LLVSGSYDNS ICFWRDDGDD 180
  181 WALTCQLQGH TNTVWALAFS PNGNTLASAD NDGNVFLWIK ISSNEDVATI DSTNILRPAL 240
  241 QEEWKQQTSL PHIHKGAVYT ISWMNDATLC SAGGDGKIVV YQREKHDEAL WHVAYEQDHA 300
  301 HGVYEINSLE YLRDDRLLSG GDDGECRVWS FK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2hesX
Description:	No description for 2hesX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits