YRC Public Data Repository - Protein Structure Prediction

Protein:	rsm18
Organism:	Schizosaccharomyces pombe
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsm18.

Description	E-value	Query Range	Subject Range
RT18B_MOUSE - 28S ribosomal protein S18b, mitochondrial OS=Mus musculus GN=Mrps18b PE=1 SV=1	159.0	[0..17]	[166..27]
RT18B_PANTR - 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes GN=MRPS18B PE=3 SV=1	156.0	[0..10]	[166..20]
gi\|208966778 - gi\|208966778\|dbj\|BAG73403.1\| mitochondrial ribosomal protein S18B [synthetic construct] MRPS18B - mitochondrial ribosomal protein S18B	154.0	[0..10]	[166..20]
gi\|73972105 - gi\|73972105\|ref\|XP_532057.2\| PREDICTED: similar to 28S ribosomal protein S18b, mitochondrial precurs...	153.0	[0..7]	[166..19]
gi\|47087117, gi\|... - gi\|47087117\|ref\|NP_997699.1\| mitochondrial ribosomal protein S18B [Rattus norvegicus], gi\|46237662\|e...	153.0	[0..17]	[166..27]
gi\|109070298 - gi\|109070298\|ref\|XP_001106763.1\| PREDICTED: mitochondrial ribosomal protein S18B [Macaca mulatta]	152.0	[0..10]	[166..20]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRRIFSPA PNRGFILCNL IQSNNSTRRG FSDNRKFNER NSEASSNVGF QRRVRSNIPS  60
   61 YLSASVEEGD IYSPNDLLFE TVKAKNQAKF YEPVREDCFK TVNENPMNYW KNPVILSRFV 120
  121 TELGRIKPRG DTGLTAKNQR LLSRAIRRAR AAGIMPTKYK SVYSEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	2uu9R
Description:	No description for 2uu9R was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits