YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl22
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl22.

Description	E-value	Query Range	Subject Range
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	217.0	[0..66]	[228..1]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	215.0	[0..66]	[230..1]
gi\|28189725 - gi\|28189725\|dbj\|BAC56477.1\| similar to ribosomal protein L17 [Bos taurus]	206.0	[0..66]	[231..1]
gi\|109113585 - gi\|109113585\|ref\|XP_001098798.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) [Macaca mulat...	206.0	[0..66]	[224..1]
gi\|31324951 - gi\|31324951\|gb\|AAH52940.1\| Rpl17 protein [Mus musculus] gi\|109122149, gi... - gi\|109122151\|ref\|XP_001089275.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 5 [Ma... gi\|114692313, gi... - gi\|55627436\|ref\|XP_518757.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146923... gi\|73962160, gi\|... - gi\|73962164\|ref\|XP_861376.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 10 [Canis... RPL17 - ribosomal protein L17 ENSCJAT000000092... - null, null gi\|123982774, gi... - gi\|123997445\|gb\|ABM86324.1\| ribosomal protein L17 [synthetic construct], gi\|123982774\|gb\|ABM83128.1\|... RL17_FELCA - 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3	206.0	[0..66]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYINQFMKI SKGFLVPSST IGLNSKTYHY KFPLLSFVRE FSNGSYLRES AQNPANLGSQ  60
   61 KGSDIFSMLA NQKDDSNRQQ KEERVKER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSRISFKKQ ETMDPSYTLQ SMVLRSSLKK VGALCRQIAH KPFYHALLQM KMSDKKISKY  60
   61 IATALVSARE NAVREAGLDE STLYVDQIWV GKAKYLKKLI TMGRGGRAIE RSPRVRVTVV 120
  121 LRDERALLRD LQRRQQRLER KKVWTPLPNR PIYLKSNFFT C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits