YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl22
Organism:	Schizosaccharomyces pombe
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl22.

Description	E-value	Query Range	Subject Range
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	217.0	[0..66]	[228..1]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	215.0	[0..66]	[230..1]
gi\|28189725 - gi\|28189725\|dbj\|BAC56477.1\| similar to ribosomal protein L17 [Bos taurus]	206.0	[0..66]	[231..1]
gi\|109113585 - gi\|109113585\|ref\|XP_001098798.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) [Macaca mulat...	206.0	[0..66]	[224..1]
gi\|31324951 - gi\|31324951\|gb\|AAH52940.1\| Rpl17 protein [Mus musculus] gi\|109122149, gi... - gi\|109122151\|ref\|XP_001089275.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 5 [Ma... gi\|114692313, gi... - gi\|55627436\|ref\|XP_518757.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|1146923... gi\|73962160, gi\|... - gi\|73962164\|ref\|XP_861376.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 10 [Canis... RPL17 - ribosomal protein L17 ENSCJAT000000092... - null, null gi\|123982774, gi... - gi\|123997445\|gb\|ABM86324.1\| ribosomal protein L17 [synthetic construct], gi\|123982774\|gb\|ABM83128.1\|... RL17_FELCA - 60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3	206.0	[0..66]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYINQFMKI SKGFLVPSST IGLNSKTYHY KFPLLSFVRE FSNGSYLRES AQNPANLGSQ  60
   61 KGSDIFSMLA NQKDDSNRQQ KEERVKER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.273	0.121	structural constituent of ribosome	a.4.1	Homeodomain-like
View	Download	0.271	0.034	structural constituent of ribosome	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.273	0.016	structural constituent of ribosome	a.74.1	Cyclin-like
View	Download	0.348	N/A	N/A	a.64.2	Bacteriocin AS-48
View	Download	0.262	N/A	N/A	a.74.1	Cyclin-like

Predicted Domain #2

Region A:
Residues: [89-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSRISFKKQ ETMDPSYTLQ SMVLRSSLKK VGALCRQIAH KPFYHALLQM KMSDKKISKY  60
   61 IATALVSARE NAVREAGLDE STLYVDQIWV GKAKYLKKLI TMGRGGRAIE RSPRVRVTVV 120
  121 LRDERALLRD LQRRQQRLER KKVWTPLPNR PIYLKSNFFT C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits