YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23H4.08
Organism:	Schizosaccharomyces pombe
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23H4.08.

Description	E-value	Query Range	Subject Range
gi\|76573650 - gi\|76573650\|dbj\|BAE44734.1\| hypothetical protein [Candida albicans] gi\|238883375 - gi\|238883375\|gb\|EEQ47013.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46443251, gi\|... - gi\|77022786\|ref\|XP_888837.1\| hypothetical protein CaO19_6498 [Candida albicans SC5314], gi\|68470123\|...	250.0	[0..2]	[265..5]
gi\|44982320 - gi\|44982320\|gb\|AAS51629.1\| ADL291Wp [Ashbya gossypii ATCC 10895] gi\|44982320, gi\|... - gi\|45187582\|ref\|NP_983805.1\| ADL291Wp [Ashbya gossypii ATCC 10895], gi\|44982320\|gb\|AAS51629.1\| ADL29...	201.0	[0..3]	[255..5]
gi\|49656859, gi\|... - gi\|50425197\|ref\|XP_461190.1\| hypothetical protein DEHA0F20724g [Debaryomyces hansenii CBS767], gi\|49...	136.0	[0..2]	[261..5]
gi\|49643496 - gi\|49643496\|emb\|CAG99448.1\| KLLA0E09131p [Kluyveromyces lactis] gi\|49643496, gi\|... - gi\|50308715\|ref\|XP_454361.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643496\|emb\|CAG9944...	93.0	[0..4]	[255..29]
gi\|49526562 - gi\|49526562\|emb\|CAG60186.1\| unnamed protein product [Candida glabrata] gi\|50289643, gi\|... - gi\|50289643\|ref\|XP_447253.1\| unnamed protein product [Candida glabrata], gi\|49526562\|emb\|CAG60186.1\|...	56.0	[0..177]	[255..38]
S7A6O_DANRE - Probable RNA polymerase II nuclear localization protein SLC7A6OS OS=Danio rerio GN=slc7a6os PE=2 SV=...	55.0	[0..5]	[266..7]
gi\|134118804, gi... - gi\|50254509\|gb\|EAL17258.1\| hypothetical protein CNBN0850 [Cryptococcus neoformans var. neoformans B-...	54.0	[0..90]	[256..161]
gi\|58262442, gi\|... - gi\|58262442\|ref\|XP_568631.1\| hypothetical protein CNN00840 [Cryptococcus neoformans var. neoformans ...	54.0	[0..90]	[256..161]
gi\|118791565, gi... - gi\|118791565\|ref\|XP_319816.3\| ENSANGP00000023643 [Anopheles gambiae str. PEST], gi\|116117663\|gb\|EAA4...	48.0	[0..5]	[277..4]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLPVLRVKR KASEDPVNAL YLELGNNPNS VSSTKRRKFA GRYYFKLSQT LKQDDRYIQI  60
   61 NDESSEPTHE DVRNIHSHTK ISSLKKNNYG IPVVQTSEDV VKAPTHMDLG SRENTKGILS 120
  121 FSSPRYTIQN LPSTQSNRVF DAIRVEQGHT TYHPHPQLDS MIQEYLSNGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPLQQSTEDY VYDIYEASSK EPNKPTFAYG VIDALSIPDA FRSSLEQELV SETVDSDKDD  60
   61 PLHDEIDEDS NAESFYQNSY PDEDEWQDSS ENDEFAYSDD AEQDFYD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits