YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC664.08c
Organism:	Schizosaccharomyces pombe
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC664.08c.

Description	E-value	Query Range	Subject Range
gi\|109114697 - gi\|109114697\|ref\|XP_001109240.1\| PREDICTED: apoptosis antagonizing transcription factor [Macaca mula...	237.0	[0..2]	[419..211]
AATF_RAT - Protein AATF OS=Rattus norvegicus GN=Aatf PE=1 SV=1	211.0	[0..4]	[425..5]
AATF_MOUSE - Protein AATF OS=Mus musculus GN=Aatf PE=1 SV=1	202.0	[0..2]	[425..3]
AATF - apoptosis antagonizing transcription factor gi\|168279097, gi... - gi\|168279097\|dbj\|BAG11428.1\| apoptosis antagonizing transcription factor [synthetic construct], gi\|1...	193.0	[0..2]	[419..3]
gi\|114667928 - gi\|114667928\|ref\|XP_511427.2\| PREDICTED: apoptosis antagonizing transcription factor [Pan troglodyte...	191.0	[0..2]	[419..3]
gi\|73966710 - gi\|73966710\|ref\|XP_537715.2\| PREDICTED: similar to Protein AATF (Apoptosis-antagonizing transcriptio...	185.0	[0..5]	[419..4]
gi\|116132204, gi... - gi\|118778068\|ref\|XP_308438.3\| ENSANGP00000017925 [Anopheles gambiae str. PEST], gi\|116132204\|gb\|EAA0...	183.0	[0..148]	[419..35]
gi\|39945318, gi\|... - gi\|39945318\|ref\|XP_362196.1\| hypothetical protein MG04641.4 [Magnaporthe grisea 70-15], gb\|EAA50882....	182.0	[0..6]	[452..105]
gi\|76642727 - gi\|76642727\|ref\|XP_603460.2\| PREDICTED: similar to Protein AATF (Apoptosis-antagonizing transcriptio...	180.0	[0..234]	[420..49]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVSLKDEL AGMLNPQPQE RDPEALEDAF SDREDSSEEE NDTLGREHYV DVSESKLRSK  60
   61 QAPQLDPKFK GRKTSRQELL NSGSLNSQSS SPSEEEDSEE DENDAVSEDH ENFSSSEASS 120
  121 ISEENEDDDQ SSAIPEKDMD RLKKIINGEK KLSDQIRTSA LEDMKKGLAL KEQMRFYDNV 180
  181 LDTRIRLQKG CSQLLSSSNQ LQGDKVEARD GLVSFIQHTL QLRKNLLIDS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [231-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVEILDSRSK RKENPVSLEE IALEMNNLDD SLNEWKNDTL TKWHNRVQAV QGISQSNKFK  60
   61 ALNQSIVQQI ENSMINKKDL VERTRIDYSD PNNKTFNPEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [331-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YNDTDFYQSL LKDFINSRMA DSTRDGTVRW MATKKQKQKK ENVDTKASKG RKIRYHVHDK  60
   61 LQNFMAPIEV TVWPDEQTED LFSSLLGQQL DLSETANDTN TSNFVEKDDE LISSNDGFSL 120
  121 FG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.107905
Match:	PF08164.3
Description:	No description for PF08164.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits