YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1198.07c
Organism:	Schizosaccharomyces pombe
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1198.07c.

Description	E-value	Query Range	Subject Range
gi\|85114207 - gi\|85114207\|ref\|XP_964654.1\| hypothetical protein ( (AL442164) conserved hypothetical protein [Neuro... gi\|16945405, gi\|... - gi\|32417488\|ref\|XP_329222.1\| hypothetical protein ( (AL442164) conserved hypothetical protein [Neuro...	517.0	[0..72]	[503..15]
gi\|46137743, gi\|... - gi\|46137743\|ref\|XP_390563.1\| hypothetical protein FG10387.1 [Gibberella zeae PH-1], gi\|42546446\|gb\|E...	513.0	[0..70]	[505..9]
gi\|151945943 - gi\|151945943\|gb\|EDN64175.1\| mannosidase [Saccharomyces cerevisiae YJM789] gi\|207342125 - gi\|207342125\|gb\|EDZ69984.1\| YMR238Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408464 - gi\|190408464\|gb\|EDV11729.1\| mannan endo-1,6-alpha-mannosidase DFG5 precursor [Saccharomyces cerevisi... DFG5_YEAST - Mannan endo-1,6-alpha-mannosidase DFG5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=D... DFG5 - Putative mannosidase, essential glycosylphosphatidylinositol (GPI)-anchored membrane protein require...	510.0	[0..68]	[507..10]
gi\|44981206 - gi\|44981206\|gb\|AAS51028.1\| ACL200Wp [Ashbya gossypii ATCC 10895] gi\|45185488, gi\|... - gi\|45185488\|ref\|NP_983204.1\| ACL200Wp [Ashbya gossypii ATCC 10895], gi\|44981206\|gb\|AAS51028.1\| ACL20...	509.0	[0..73]	[505..19]
gi\|38100419, gi\|... - gi\|86196501\|gb\|EAQ71139.1\| hypothetical protein MGCH7_ch7g546 [Magnaporthe grisea 70-15], gi\|3997065...	504.0	[0..72]	[506..176]
gi\|119173096, gi... - gi\|90297847\|gb\|EAS27478.1\| hypothetical protein CIMG_10083 [Coccidioides immitis RS], gi\|119173096\|r...	500.0	[0..69]	[506..16]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAVIVAIVR WERAMIGLLR HCAARLVAFV NNTTISKPYF STFFEGGIHS LLFFYPKRNW  60
   61 WFFIKMR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLSFFFEFFF LFSFAFAFDF DVTSDDSINS ALTTVTDGML NYYQSTSHTF TAYWWMTGAG  60
   61 LNSMTDTYAA TGNTTHLDML ISALVANKGD NNDYAPNSEK FDLGNDDQGI WGLSAMSAAE 120
  121 VNMTTGDSSA SFTELAQAVF NEIMSRWDTS SCGGGVRWQI YSFNNGYSYK NSISNGILFQ 180
  181 LAARLARYTN NDTYVDLAQK VWDWSTTVGF VDLDDYTVYD GASVTSNCSS ITNEQWSYNV 240
  241 GVYLAGTAFL YNYTNGSSVW QTHMEGLMNK ALDYYFTSDK IIYEPSCEPT ESCNSDQTAF 300
  301 KGMLARFLGY TMQLAPYTVE TILPYIQSSA EAAALACSGG SDGVTCGYMW YWNNGTWDDH 360
  361 YGLGEQISAV ETFQALLAQQ SATILTLDTG ASSESNPDAG TDDGDTVTIT PATKSDKGWA 420
  421 GFLTFAFSFV FLLFSIWLYF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.01
Match:	1nc5A
Description:	Hypothetical protein YteR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
trehalase activity	4.23942428290504	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.78681366425382	bayes_pls_golite062009
alpha,alpha-trehalase activity	3.55712700159445	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	3.06084463737498	bayes_pls_golite062009
hydrolase activity	2.4324152075641	bayes_pls_golite062009
glucosidase activity	1.29725707798041	bayes_pls_golite062009
binding	1.09492132758288	bayes_pls_golite062009
catalytic activity	1.0882760267763	bayes_pls_golite062009
glucan 1,4-alpha-glucosidase activity	0.459801253504163	bayes_pls_golite062009
protein binding	0.208998323911823	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.0402220178011703	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: