YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC543.05c
Organism:	Schizosaccharomyces pombe
Length:	517 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC543.05c.

Description	E-value	Query Range	Subject Range
gi\|45384448, gi\|... - gi\|45384448\|ref\|NP_990294.1\| solute carrier family 4, anion exchanger, member 2 (erythrocyte membran...	692.0	[0..3]	[516..665]
gi\|32400189 - gi\|32400189\|emb\|CAD61186.1\| anion exchanger 2 [Leucoraja erinacea]	683.0	[0..3]	[516..661]
gi\|40021643 - gi\|40021643\|gb\|AAR37053.1\| Na-driven Cl-HCO3 exchanger NDCBE1-A [Rattus norvegicus]	681.0	[0..4]	[507..444]
gi\|109096705 - gi\|109096705\|ref\|XP_001089833.1\| PREDICTED: similar to solute carrier family 4 (anion exchanger), me...	679.0	[0..4]	[507..444]
gi\|114644651 - gi\|114644651\|ref\|XP_001146846.1\| PREDICTED: solute carrier family 4, sodium bicarbonate cotransporte...	678.0	[0..4]	[507..444]
gi\|74004726 - gi\|74004726\|ref\|XP_535932.2\| PREDICTED: similar to solute carrier family 4, sodium bicarbonate trans...	668.0	[0..4]	[507..745]
gi\|62632705, gi\|... - gi\|82524322\|ref\|NP_001032314.1\| solute carrier family 4, anion exchanger, member 2a [Danio rerio], g...	662.0	[0..3]	[516..674]
gi\|3882199 - gi\|3882199\|dbj\|BAA34459.1\| KIAA0739 protein [Homo sapiens]	662.0	[0..4]	[507..530]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKDKKFNY IFGSEIVNDV KKRLPYYKSD WIDACHYRVL PACLNIYFSN LLPELAFALD  60
   61 MFAKTNNSFG VNEVLLASVL GSVVFALLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQPLCIVGVT GPITVFNYTV YDIMHDRGTP YFPFLCWICL WSMIFHFIIA IANGVYFVKH  60
   61 ITKFSCEIFG LYVAFIYLEK GVQVLCDQLK YGLTNTFLSI TIALLFLMVG WLCDTVGKSS 120
  121 LFSY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [214-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVRILLLDYG LVASIIFFSG FQHIGKMREV SLAKLPTTKA FEPTLSRSWF IKFWKIPVGD  60
   61 VFLAIPFSIV LTILFYFDHN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [294-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSVMAQDPS FPLTKPAGFH WDFFLLGITT GVSGILGIPA PNGLIPQAPM HTAALCVKRV  60
   61 DYDEDEIEKT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [364-517]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKEVIDRVVE QRASNFIQGL MTVGTMTGPL LLVLHQIPQC VLAGLFWVMG FSAIFGNGIT  60
   61 QNVIWMLSDR KVVSKNHTLN HCSSKRVVWL YTILQLIGFG ATFAITQVDK ASIGFPIIIL 120
  121 LLIPFRTYCM PKWFLEEDLE ILDENVGIIA YQKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits