YRC Public Data Repository - Protein Structure Prediction

Protein:	ins1
Organism:	Schizosaccharomyces pombe
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ins1.

Description	E-value	Query Range	Subject Range
gi\|40741040, gi\|... - gi\|67528705\|ref\|XP_662069.1\| hypothetical protein AN4465.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	297.0	[0..19]	[280..43]
gi\|42552285, gi\|... - gi\|46122413\|ref\|XP_385760.1\| hypothetical protein FG05584.1 [Gibberella zeae PH-1], gi\|42552285\|gb\|E...	287.0	[0..7]	[280..48]
gi\|38110790, gi\|... - gi\|39977051\|ref\|XP_369913.1\| hypothetical protein MG06428.4 [Magnaporthe grisea 70-15], gb\|EAA56457....	265.0	[0..8]	[280..55]
gi\|45198561, gi\|... - gi\|45198561\|ref\|NP_985590.1\| AFR043Wp [Ashbya gossypii ATCC 10895], gi\|44984512\|gb\|AAS53414.1\| AFR04... gi\|44984512 - gi\|44984512\|gb\|AAS53414.1\| AFR043Wp [Ashbya gossypii ATCC 10895]	265.0	[0..1]	[281..1]
NSG1_YEAST - Protein NSG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSG1 PE=1 SV=1 NSG1 - Protein involved in regulation of sterol biosynthesis; specifically stabilizes Hmg2p, one of two HMG...	263.0	[0..19]	[281..32]
gi\|5410355 - gi\|5410355\|gb\|AAD43048.1\|AF125392_1 insulin induced protein 2 [Homo sapiens]	262.0	[0..87]	[280..22]
gi\|55732044 - gi\|55732044\|emb\|CAH92729.1\| hypothetical protein [Pongo abelii] gi\|55732044\|emb\|... - hypothetical protein [Pongo pygmaeus]	261.0	[0..87]	[280..20]
INSI2_PIG - Insulin-induced gene 2 protein OS=Sus scrofa GN=INSIG2 PE=2 SV=2	260.0	[0..87]	[280..22]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKEIYEPR PRYPDGYNGN RAVKKSLSVL SLDNMKSTLS GLFAPLKLDE EQAEDDESLS  60
   61 SYEDYASRQI DDDLKKQRKK GITFI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.676	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.470	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.468	a.178.1	Soluble domain of poliovirus core protein 3a
View	Download	0.458	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.450	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.445	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.441	a.178.1	Soluble domain of poliovirus core protein 3a
View	Download	0.403	a.4.1	Homeodomain-like
View	Download	0.350	d.55.1	Ribosomal protein L22

Predicted Domain #2

Region A:
Residues: [86-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSSLITFFC KLCVIFGLGF VFTYLAEQIV QDAKLPLLTV NLKSWKFEPP WPAIFGFVAV  60
   61 ILGLSYRRMD TKYPLGAAPL RPSQSSKWQW ISRYLAAFAT LLLSMKKLLF ISNSHSIVAL 120
  121 VASSASIWYI FDRSRNGIIL STITSVLGSI LYYNLVDTSK IELNGVEFPE IQFRLWIPMI 180
  181 LFSASTIVGN AGRLLF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	131.657577
Match:	PF07281.3
Description:	No description for PF07281.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits