| Protein: | SPBC776.08c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1097 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC776.08c.
| Description | E-value | Query Range |
Subject Range |
|
|
1360.0 | [0..2] | [1094..36] |
|
|
1354.0 | [0..1] | [1094..24] |
|
|
1344.0 | [0..1] | [1094..26] |
|
|
1332.0 | [0..1] | [1094..24] |
|
|
1299.0 | [0..19] | [1094..180] |
|
|
1258.0 | [0..11] | [1096..23] |
|
Region A: Residues: [1-676] |
1 11 21 31 41 51
| | | | | |
1 MNGLKREHES SSSQDGSKTP ETEYDSHVDS IEDIHSLASK RKKLNEKKEN LEDLTLLKTS 60
61 AFELKLNELI REISVRGKYF RHANTFVEKI KDLIFKTPVI PETNFWSACK NLEKDKKVIV 120
121 PLAEPLSAKD TNLRASFVPP KTVTPGIFSC SNKFFLNPDG WSYDLFLEIP ESIFTQKDYL 180
181 NGRYFRKRAF YLTCIAKHLL ENLGNEVKLE FVAFNDDIRR PILAILPESK GFAATGKRFT 240
241 VFLIPTVRQI FPVSKLLPHK NAIRDFMEHE ELKPTPFYNN SVLEEQNLLF YRDLVKKYSV 300
301 NPQFLDACGL GSTWLNMRGF SSSIHSNGFG LLEWYVLMAL LMSSTGLPAG NVLNTYLTAA 360
361 QFFKSMLQFL SSKNLTSTLF KLNADSSNLK IGNGHLPTLI DCNTGFNLLG KMKQSFFEYF 420
421 QASCRHTLNL LDENANYNFS KIFITHVNVP ALEFDVSGCI PLEPKELEDP NFCRKTDLDS 480
481 PYSLYLEYTW DLLQHALGDR VCQIILYSSI CTSCSINESL KTKLPKLISF GLLLNPDALL 540
541 RLVDIGPSPD DTVGSQKFRE FWGEVSELRK FKNGSIAESV YWECSSPDER IRIPQRIIRH 600
601 ILNRHLGNNV GDRVSFRNEK FRVYVHSKIS PNTDTYNEYV PVMEAYNEAV KSLINLSDIP 660
661 LSIAEILPAD ESLRYS
|
| Detection Method: |  |
| Confidence: | 2.55 |
| Match: | 1q78A |
| Description: | Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.21555027517466 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.7166207083291 | bayes_pls_golite062009 |
| nucleic acid binding | 1.4031460115872 | bayes_pls_golite062009 |
| polynucleotide adenylyltransferase activity | 0.986864608285919 | bayes_pls_golite062009 |
| binding | 0.940725834840942 | bayes_pls_golite062009 |
| DNA binding | 0.931982952649779 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.825883515331479 | bayes_pls_golite062009 |
| catalytic activity | 0.718799603354138 | bayes_pls_golite062009 |
| transferase activity | 0.245732860673913 | bayes_pls_golite062009 |
|
Region A: Residues: [677-856] |
1 11 21 31 41 51
| | | | | |
1 SSSVPFYESS TCAPIDVVFQ FESSSKWPDE LEGIQRTKIA FLLKIAELLE ALDNVERASV 60
61 GLENTDNPTH NCCFLQVLFS NNFTFRYRLR NDREIFFWKS LERNPSTKLS AQKGLYAYEH 120
121 MFQFIPRHTL AIQAICQAHR SYSMAVRLAK HWFYSHLLTD HVTDEVIELL VASVYINSSS 180
181
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [857-1002] |
1 11 21 31 41 51
| | | | | |
1 WRTTSSGETS FCRMLHFLAH WDWRFDPLII NSNGKLPHDV RHQATEKLES IRKQDVAIAH 60
61 NAYYIITDYD FDGNHIGYYK PSKIIANRIT SLARASLSEL LKDTPNYKSI FKSSLDIYHV 120
121 VIDVNINKLP MYRESNLTKY KNLQNM
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1003-1097] |
1 11 21 31 41 51
| | | | | |
1 SSERPGFEPI TEFVKELHRC FEDTISFFYN KKNPKVVTGV FNPRILANRP YRTNIDYPFK 60
61 VVDKDTVVLD ADVVCEEIRQ VGGDLIRSIQ LQLKA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
