YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC409.18
Organism:	Schizosaccharomyces pombe
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC409.18.

Description	E-value	Query Range	Subject Range
gi\|27542785 - gi\|27542785\|gb\|AAO16875.1\| PAP2A-GFP fusion protein [synthetic construct]	224.0	[0..14]	[278..10]
PLPP1_CAVPO - Phospholipid phosphatase 1 OS=Cavia porcellus GN=PLPP1 PE=2 SV=1	215.0	[0..14]	[277..10]
gi\|122692411, gi... - gi\|81674095\|gb\|AAI09902.1\| Phosphatidic acid phosphatase type 2A [Bos taurus], gi\|122692411\|ref\|NP_0...	212.0	[0..14]	[277..10]
gi\|49075656, gi\|... - gi\|71020361\|ref\|XP_760411.1\| hypothetical protein UM04264.1 [Ustilago maydis 521], ref\|XP_401879.1\| ...	210.0	[0..3]	[266..41]
PPAP2A - phosphatidic acid phosphatase type 2A	207.0	[0..14]	[277..10]
gi\|114600248 - gi\|114600248\|ref\|XP_517759.2\| PREDICTED: phosphatidic acid phosphatase type 2A isoform 3 [Pan troglo...	206.0	[0..14]	[277..10]
gi\|73956402 - gi\|73956402\|ref\|XP_536696.2\| PREDICTED: similar to phosphatidic acid phosphatase type 2B [Canis fami...	206.0	[0..9]	[279..32]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVGKHVKL FWNVYSDYAV LIAISLSYFV FDVLMLPFTR QFSLEDITIS HPFALHEQVP  60
   61 TKYLGIICVF FPALVLYGFG KLR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSLLFWKSL MGLLYSTMVC GLCVSLLKNA VGRPRPDFLA RCQPFESTPK TGLVDVLSCS  60
   61 VPWSDKVLQD GFRSFPSGHT SFSFAGLGFL AIFLAGQLKM FRNKTSSWKV VVPLVPLSIA 120
  121 SWIGLSRSQD YRHHKEDIAV GALFGFAIAY VVYRQLFPPL DHHNADILYV QAELDEGYTN 180
  181 VHSAGNSSAT NAEQMV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1d2tA
Description:	Bacterial acid phosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits